BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907402
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60640.1 | Symbols: | unknown protein; Has 42416 Blast hits... 1432 0.0
> AT1G60640.1 | Symbols: | unknown protein; Has 42416 Blast hits
to 22533 proteins in 1340 species: Archae - 32; Bacteria
- 6461; Metazoa - 16431; Fungi - 3749; Plants - 1747; Viruses
- 284; Other Eukaryotes - 13712 (source: NCBI BLink). | chr1:22337375-22339672
REVERSE LENGTH=1236
Length=1236
Score = 1432 bits (775), Expect = 0.0
Identities = 950/1031 (92%), Gaps = 25/1031 (2%)
Strand=Plus/Plus
Query 1 ATGATAAAGAGACGATTTTACAAGCTTGAGCATGGTGATAAAGACAGTGGATCCGATTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 ATGATAAAGAGACGATTTTACAAGCTTGAGCATGGTGATAAAGACAGTGGATCCGATTCA 114
Query 61 TCTTGTTTCTCTTCTGATTCTGATCCTGAGACCgaagaatcagaagaatctgaagaagaa 120
|| || ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 115 TCGTGCTTCTCTTCTGACTCTGATCCTGAGACGGAAGAATCAGAACAATCTGAAGAAGAA 174
Query 121 gactctgttgcagaagttt-------c-----tga---agaagatgatgaaTCCCCAGCT 165
||||||||||||||||||| | ||| || |||||||||||||||||||
Sbjct 175 GACTCTGTTGCAGAAGTTTCCGAGGACGGTGATGATTCAGGAGATGATGAATCCCCAGCT 234
Query 166 GCTGACGAAGACGCtgatgttgatgatggtgatggtgatgataactctgatgctgatgaC 225
|||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 235 GCTGGCGAAGACGCTGATG-T--TGA---TGATGGTGATGATAACTCTGATGCTGATGAC 288
Query 226 TATGGTGGGACATTGGAGAAGATGTCAATGAATCGTTATTTAGAAGAACCACCGGAAGAG 285
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 289 TATGGTGGGACATTGGAGAAGATGTCAATGAATCGTTTTTTAGAAGAACCACCCGAAGAA 348
Query 286 GAGGAAGAGAACTATATTCTAGGTTGTATGATACAATCCAAATCGGTTTATAAATGCAGA 345
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 349 GAGGAAGAGAACTATATTCTCGGTTGTATGATACAATCCAAATCGGTTTATAAATGCAGA 408
Query 346 TATTGCCCAACAGTTGTTTGCTTGAATGAGAACACAATGCAAGCACATGTTTCATCAAAG 405
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 TATTGTCCAACCGTTGTTTGCTTGAATGAGAACACAATGCAAGCACATGTTTCATCAAAG 468
Query 406 AAGCATGCCCGTATGGAGAAATTAGTGAAAGAAGGAAAGGTCAGAACCGATGATGAAGAA 465
|||||||| |||||||||||||||||||||||||||||| | ||||| ||||| ||||||
Sbjct 469 AAGCATGCTCGTATGGAGAAATTAGTGAAAGAAGGAAAGATTAGAACTGATGACGAAGAA 528
Query 466 TTTGATGATCCAGAGACAGCATCTCAGGAGAAGCAGACTAAAGGAAACAGAAGATCACAA 525
|||| |||| |||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 529 GTTGACGATCTAGAGACAGCATCTCAGGAGAAGGAGAAAAAAGGAAACAGAAGATCACAA 588
Query 526 AGACAGGGAAAGAGATCCCAAAAACCGGAAAAGGGCTCATCAACCAAACATGAAGAAAAC 585
||||||||||||||||| ||||||| |||||||| |||| |||||| ||| |||||||
Sbjct 589 AGACAGGGAAAGAGATCTCAAAAACAGGAAAAGGATTCATTGACCAAAAATGGAGAAAAC 648
Query 586 GATGAAGTTGACGATCCAGAGACGCCATCTCAGGAGAAGCAGATAAAAGGAAACAGAAGA 645
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GAAGAAGTTGAAGATCCAGAGACGCCATCTCAGGAGAAGCAGATAAAAGGAAACAGAAGA 708
Query 646 GCTCAAAGAGAGCATAAGAGATCACAAAAACAGGAAAAGGGTTCATCGACCAAACATGGA 705
|||| ||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 709 GCTCGGAGAGAGCTTAGGAGATCACAAAAACAGGAAAAGGATTCATCGACCAAACATGGA 768
Query 706 GAAAAGGAAGAGGTTGACAATCCAGAGACGCCATCTCAGGAGAAGCAGATAAAAGAAAAC 765
||||| ||||||||||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct 769 GAAAACGAAGAGGTTGACAATTCAGGGACGCCATCTCAGGGGAAGCAGATAAAAGAAAAC 828
Query 766 AGTAGAGCACGAAGACAGCGTAAAAGATTAGAAAAACAGGGAAAGGGTTCAATAACCAAA 825
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 829 AGTAGAGCACGAAGACAGCGTAAGAGATTAGAAAAACAGGGAAAGGGTTCATTAACCAAA 888
Query 826 CATGGAGAAAACGAAGAAGTTGA-AGATCCAGAGATGCCATCACAGGAGAAGCAGATAAA 884
||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 889 CATGGAGAAAACGAAGAAGTTGACA-ATCCAGAGACACCATCACAGGAGAAGCAGATAAA 947
Query 885 AGGAAACAGTAGATCACAAAAACAGCTTAAGAGATCAGAAAAACAGGAAAAGAGTTC-AT 943
|||||||||||| |||| || |||||||||||||||||||||||||||||||| ||| ||
Sbjct 948 AGGAAACAGTAGCTCACGAAGACAGCTTAAGAGATCAGAAAAACAGGAAAAGA-TTCCAT 1006
Query 944 TGACCAAGGAAGGAGAAAACGAAGATGCATCGCAAAAGTTTAGAAAGAAAAGACGTCAAA 1003
||| |||||||||||||||||||||||||| ||||| | |||||||||||| |||||||
Sbjct 1007 CGACTAAGGAAGGAGAAAACGAAGATGCATCACAAAAATCTAGAAAGAAAAGGCGTCAAA 1066
Query 1004 CTAAGGATTGA 1014
|||||||||||
Sbjct 1067 CTAAGGATTGA 1077
Score = 407 bits (220), Expect = 1e-112
Identities = 335/390 (86%), Gaps = 10/390 (3%)
Strand=Plus/Plus
Query 584 ACGATGAAGTTGACGATCCAGAGAC-GCCATCTCAGGAGAAGCAGATAAAAGGAAACAGA 642
|||| ||||||||||||| |||||| | |||||||||||||| ||| |||||||||||||
Sbjct 521 ACGAAGAAGTTGACGATCTAGAGACAG-CATCTCAGGAGAAGGAGAAAAAAGGAAACAGA 579
Query 643 AGAGCTCAAAGAGA-GCATAAGAGATCACAAAAACAGGAAAAGGGTTCATCGACCAAACA 701
||| | |||||| | | | |||||||| |||||||||||||||| ||||| ||||||| |
Sbjct 580 AGATCACAAAGACAGGGA-AAGAGATCTCAAAAACAGGAAAAGGATTCATTGACCAAAAA 638
Query 702 TGGAGAAAAGGAAGAGGTTGACA-ATCCAGAGACGCCATCTCAGGAGAAGCAGATAAAAG 760
||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 639 TGGAGAAAACGAAGAAGTTGA-AGATCCAGAGACGCCATCTCAGGAGAAGCAGATAAAAG 697
Query 761 AAAACAGTAGAGCACGAAGACAGCGTAAAAGATTAGAAAAACAGGGAAAGGGTTCAATA- 819
|||||| ||||| || ||| ||| || |||| | ||||||||| ||||| |||| |
Sbjct 698 GAAACAGAAGAGCTCGGAGAGAGCTTAGGAGATCACAAAAACAGGAAAAGGATTCA-TCG 756
Query 820 ACCAAACATGGAGAAAACGAAGAAGTTGA-AGATCCAGAGATGCCATCACAGGAGAAGCA 878
||||||||||||||||||||||| ||||| | || ||| || |||||| |||| ||||||
Sbjct 757 ACCAAACATGGAGAAAACGAAGAGGTTGACA-ATTCAGGGACGCCATCTCAGGGGAAGCA 815
Query 879 GATAAAAGGAAACAGTAGATCACAAAAACAGCTTAAGAGATCAGAAAAACAGGAAAAGAG 938
|||||||| |||||||||| ||| || ||||| |||||||| ||||||||||| |||| |
Sbjct 816 GATAAAAGAAAACAGTAGAGCACGAAGACAGCGTAAGAGATTAGAAAAACAGGGAAAGGG 875
Query 939 TTCATTGACCAAGGAAGGAGAAAACGAAGA 968
|||||| ||||| | ||||||||||||||
Sbjct 876 TTCATTAACCAAACATGGAGAAAACGAAGA 905
Score = 259 bits (140), Expect = 3e-68
Identities = 222/261 (85%), Gaps = 8/261 (3%)
Strand=Plus/Plus
Query 712 GAAGAGGTTGACAATCCAGAGAC-GCCATCTCAGGAGAAGCAGATAAAAGAAAACAGTAG 770
||||| |||||| ||| |||||| | |||||||||||||| ||| ||||| |||||| ||
Sbjct 523 GAAGAAGTTGACGATCTAGAGACAG-CATCTCAGGAGAAGGAGAAAAAAGGAAACAGAAG 581
Query 771 AGCACGAAGACAGCGTAAA-AGAT-TAGAAAAACAGGGAAAGGGTTCAATAACCAAACAT 828
| ||| ||||||| | ||| |||| | ||||||||| ||||| |||| | |||||| ||
Sbjct 582 ATCACAAAGACAG-GGAAAGAGATCT-CAAAAACAGGAAAAGGATTCATTGACCAAAAAT 639
Query 829 GGAGAAAACGAAGAAGTTGAAGATCCAGAGATGCCATCACAGGAGAAGCAGATAAAAGGA 888
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 640 GGAGAAAACGAAGAAGTTGAAGATCCAGAGACGCCATCTCAGGAGAAGCAGATAAAAGGA 699
Query 889 AACAGTAGATCACAAAAACAGCTTAAGAGATCAGAAAAACAGGAAAAG-AGTTCATTGAC 947
||||| ||| | | | | |||||| ||||||| |||||||||||||| | ||||| |||
Sbjct 700 AACAGAAGAGCTCGGAGAGAGCTTAGGAGATCACAAAAACAGGAAAAGGA-TTCATCGAC 758
Query 948 CAAGGAAGGAGAAAACGAAGA 968
||| | ||||||||||||||
Sbjct 759 CAAACATGGAGAAAACGAAGA 779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5