BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907410
Length=2112
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60560.1 | Symbols: | SWIM zinc finger family protein | chr... 3397 0.0
> AT1G60560.1 | Symbols: | SWIM zinc finger family protein | chr1:22308572-22311350
REVERSE LENGTH=2404
Length=2404
Score = 3397 bits (1839), Expect = 0.0
Identities = 2025/2116 (96%), Gaps = 8/2116 (0%)
Strand=Plus/Plus
Query 1 ATGGAAATAGTCGAATCTA-TAGAAGAGATTCCAGTGCAAAACCCACAAATAGAAGATTT 59
||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||
Sbjct 74 ATGGAAATAGTCGAATC-ATTAGAAGAGATTCCAGTGCAAAACCCACAAGTAGAAGACTT 132
Query 60 TTCATGGGCTGACTTAACCTGGACCAAATTCGGAACATCGGAGCATCACGACGAAGTAGC 119
|||||||||||| || ||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 133 TTCATGGGCTGATTTGACCTGGACCAAATTCGGAACATCAGAGCATCACGACCAAGTAGC 192
Query 120 ACTGA-TTCCATATGCAAGAGTCGACGAATTCATAATCGGAGAATGCTCAAACGCAGAGT 178
| | | ||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 193 A-TTAGTTCCATACGCAAGAGTCGACGAATTCATCATCGGAGAATGCTCAAACGCAGAGT 251
Query 179 GCCCTACACGATTTCACATCGAAAGAGGAAGAAAACGTTCTCGAGGCAGCCTCAAAGAGT 238
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 252 GCCCTACACGATTCCACATCGAAAGAGGAAGAAAACGCTCTCGAGGCAGTCTCAAAGAGT 311
Query 239 ACAAGAGCGATGAGTATTTGGAATATAGACTGTATTGGTGTTCTTTTGGTCCTGAGAACT 298
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 312 ACAAGAGCGACGAGTATTTGGAATATAGACTGTATTGGTGTTCATTTGGTCCTGAGAACT 371
Query 299 ATGGAGAAGGTGGTGGTGTGTTGCCCAGTAGAAAATATCGTCTCAACACTAGAAATCGAG 358
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 372 ATGGAGAAGGTGGTGGTGTGTTACCCAGTAGGAAATATCGTCTCAACACTAGAAATCGAG 431
Query 359 CTGCGAGACCTCAATCTATGAGAGGATGTACTTGTCATTTTGTGGTGAAACGACTCTATG 418
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 432 CTGCGAGACCTCAATCTATGAGAGGATGTACATGTCATTTTGTGGTTAAACGACTCTATG 491
Query 419 CTCGTCCTTCACTTGCGCTTCTTATATACAATGAGAGACGACATGTGAACAAAGCTGGGT 478
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 492 CTCGTCCTTCACTTGCGCTTCTTATATACAATGAGAGACGACATGTCAACAAAGCTGGGT 551
Query 479 TTGTTTGTCATGGACCTCTTGATAGAGATGCTATTGGTCCTGGTGCTAAGAAGATTCCTT 538
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 552 TCGTTTGTCATGGACCTCTTGATAGAGATGCGATTGGTCCTGGTGCTAAGAAGATTCCTT 611
Query 539 ATATATGTAATGAGATTCAGCAGCAAACTATGTCTATGATCTATCTTGGGATTCCTGAAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 ATATATGTAATGAGATTCAGCAGCAAACTATGTCTATGATCTATCTTGGGATTCCTGAAG 671
Query 599 AAAACGTTTTGGAGAAACATATTGAAGGGATTCAGAGGTATTGTGGTTCTGATGCAACTG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AAAACGTTTTGGAGAAACATATTGAAGGGATTCAGAGGTATTGTGGTTCTGATGCAACTG 731
Query 659 TTGATAGTCTTGCCTCTCAGTATGTTCATAAACTTGGGATGATTATCAAACGTTCCACTC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TTGATAGTCTTGCCTCTCAGTATGTTCATAAACTTGGGATGATTATCAAACGTTCCACTC 791
Query 719 ATGAGCTGGATTTAGATGATCAAGCTAGTATCAAGATATGGGCTGAGCGCAACAAGAAAT 778
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 792 ATGAGCTGGATTTAGATGATCAAGCTAGTATCAAGATTTGGGCTGAGCGCAACAAGAAAT 851
Query 779 CAATCTTCTTTTATCAGGAATCTTCGGAAACGGATCAGTTCATGCTCGGGATTCAAACGG 838
| |||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||
Sbjct 852 CCATCTTCTTTTATCAGGAATCTTCGGAGACGGATCAGTTTATGTTGGGGATTCAAACGG 911
Query 839 AGTGGCAGTTGCAGCAGCTTGTGCGTTTTGGGCATTGTAGTCTTATTGCAGCTGATTTGA 898
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 912 AGTGGCAGTTGCAGCAGCTTGTGCGTTTTGGGCATTGTAGTCTTGTTGCAGCTGATTCGA 971
Query 899 CATTTGGGATAAAGAGACTTAAGTATCCTCTGTGCACGCTTCTTGTATTTGATTCAAGAC 958
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 CTTTTGGGATAAAAAGACTTAAGTATCCTCTGTGCACGCTTCTTGTATTTGATTCAAGAC 1031
Query 959 ATCATGCTCTCCCTGTCGCTTGGATTATCTCGCGTAGCTATTTGAAATCTGATGTT-ACG 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1032 ATCATGCTCTCCCTGTCGCTTGGATTATCTCGCGTAGCTATTTGAAATCTGATGTTGA-G 1090
Query 1018 AAGTGGATGAAAATACTACTCCAACGCGCCCAGAGTGTTGATCCTGGTTTCAAAATCAAT 1077
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1091 AAGTGGATGAAAATACTACTCCAACGCGCCCAGAGTGTTGAGCCTGGTTTCAAAATCAAT 1150
Query 1078 GGCTTTATCATTGACGATGCTGCAACAGAGATTGATCCCATAAGGGACACATTTTGTTGC 1137
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1151 GGCTTTATCATTGACGATGCTGCAACGGAGACTGATCCCATAAGGGACACATTTTGTTGC 1210
Query 1138 CCCATCCTTTTCTCTCTCTGGCGTGTTCGTAGATCCTGGCTTCGGAATGTTGTGAAGAAG 1197
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1211 CCCATCCTTTTCTCTCTCTGGCGTGTTCGTAGATCATGGCTTCGAAATGTTGTGAAGAAG 1270
Query 1198 TGCGATAGCATTGAGGTTCAAAGAGATTTATTCAAATGTTTAGGAGAACTCGTGTACAGT 1257
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1271 TGCGATAGCATTGAGGTTCAAAGAGATTTATTCAAATGTCTAGGAGAACTCGTGTACAGT 1330
Query 1258 ATTTGGGATGGAGTAGATACAACAAAGGCTTTAGAAAGGTTAACTCAGGATTTTGTTGAT 1317
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1331 ATTTGGGATGGAGTAGATACAACAAAGGCTTTAGAAAAGTTAACGCAGGATTTTGTTGAT 1390
Query 1318 CAAACCGCGTTCATGCAGTATTTCACATCCACTTGGTTGCCTAAAATAGGAATGTGGCTC 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 CAAACCGCGTTCATGCAGTATTTCACATCCACTTGGTTGCCTAAAATAGGAATGTGGCTT 1450
Query 1378 TCAACTATGAAAAGTTTTCCTCTTGCAAGCCAAGAAGCATGTGGTGCGATAGAAGCTTAC 1437
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1451 TCAACTATGAAAAGTCTTCCGCTTGCAAGCCAAGAAGCATGTGGTGCGATAGAAGCTTAC 1510
Query 1438 CATATAAAGCTTAAAGTAAAATTGTTTGACGATACACACCTCGGTGCCCTTCAGAGAGTA 1497
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 CATATAAAGCTGAAAGTAAAATTGTTTGACGATACACACCTCGGTGCCCTTCAGAGAGTA 1570
Query 1498 GATTGGTTGGTACACAAGCTGACGACGGAACTCCATTCGAGTTATTGGCTTGATCGGTAT 1557
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1571 GATTGGTTGGTACACAAGCTGACGACTGAACTTCATTCTAGTTATTGGCTTGATCGGTAT 1630
Query 1558 GCTGATGAAAGTGATTCTTTCCAAAATGTTAAAGAAGAATACATTGCTTCTACTTCCTGG 1617
||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||
Sbjct 1631 GCTGATGAAAGTGATTCTTTCCAGAATGTTAAAGAAGAATACATTGCTTCAACATCATGG 1690
Query 1618 CACAGGGCG-TCAGAGATTCCAGAATCCGCTGTTACACTAGACGAAAGTAACCTCCTTGT 1676
|| | ||| | |||||||| || || ||||||||||||||||||| || ||||| |
Sbjct 1691 TACCGAGCGATG-GAGATTCCTGACTCTGCTGTTACACTAGACGAAAACAATATCCTTCT 1749
Query 1677 TGCAAAGGTTCAGTCTCAGAGAGATAGCGATGTAACACGAGTTGTGTGGAACCCAGGTTC 1736
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1750 AGCGAAGGTTCAGTCTCAGAGAGATAGCGATGTAACACGAGTCGTGTGGAACCCAGGTTC 1809
Query 1737 GGAGTTTGCCTTCTGTGATTGTGCTTGGTCTTTGCAAGGAAATTTATGCAAACACATCAT 1796
||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1810 GGAGTTTGCTTTCTGTGATTGCACTTGGTCTTTGCAAGGAAATCTATGCAAACACATCAT 1869
Query 1797 AAAGGTAAATACAATGTGTGAAAACCGCCAAGGATATGGTGACTCAATGTCCTTGCGTTC 1856
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1870 AAAGGTAAATACAATGTGTGAAAACCGCGAAGGATATGGTGACTCAATGTCCTTGCGTTC 1929
Query 1857 GTTCAAAGAGAAACTGAGAAACATAAAGATGAAACCTATGGATGACTCGATAGCCCTGGA 1916
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1930 CTTCAAAGAGAAACTGAGAAACATTAAGATGAAACCTATGGATGACTCGATAGCTTTGGA 1989
Query 1917 TCTGTCAATGGCACTGACGCTGCAGATGTTTGATCAGATAAAGCAATTGGTGCAATTAAG 1976
|||||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1990 TCTGTCGATGGCATTGACGCTGCAGATGTTTGATCAGATAAAGCAGTTGGTGCGATTAAG 2049
Query 1977 CGGAACAAATGATATCAGCAATATAGTCAATGATTTGCCAGTGAAATGGGGTTGTAAGAA 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2050 CGGAACAAATGATATCAGCAATATAGTCAATGATTTGCCAGTGAAATGGGGTTGTAAGAA 2109
Query 2037 AGGCCGAACAACCATAGGCATTCCTGCATCCATAGCTGCCTTTACAAAGAAAAGGAGTCA 2096
|||||||||||||||||||||||||||||| || |||||||||||||||||||| || ||
Sbjct 2110 AGGCCGAACAACCATAGGCATTCCTGCATCTATTGCTGCCTTTACAAAGAAAAGAAGCCA 2169
Query 2097 GAAACGAAAGCGATAA 2112
|||| |||||||||||
Sbjct 2170 GAAAAGAAAGCGATAA 2185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104718336870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5