BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907432
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60450.1 | Symbols: AtGolS7, GolS7 | galactinol synthase 7 |... 1469 0.0
AT1G60470.1 | Symbols: AtGolS4, GolS4 | galactinol synthase 4 |... 887 0.0
> AT1G60450.1 | Symbols: AtGolS7, GolS7 | galactinol synthase 7
| chr1:22271226-22273214 REVERSE LENGTH=999
Length=999
Score = 1469 bits (795), Expect = 0.0
Identities = 934/1001 (93%), Gaps = 10/1001 (1%)
Strand=Plus/Plus
Query 1 ATGGCCCCTGAAACTCATGTGGACATGATCCATGCATCCGAGAAGGCTCATAAGAAGAGA 60
||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 1 ATGACCCCTGAAACTCATGTGGACATGATCAATGCATCCGAGAAGGCTCCTAAGGAGAGA 60
Query 61 GCATACGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGATTAGCA 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCCTACGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGATTAGCA 120
Query 121 AAGGGTTTGCGGAAAGTCAAAAGTGCGTATCCTCTTGTTGTTGCTACGTTACCTGATGTG 180
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 AAGGGTTTGCGGAAGGTCAAAAGTGCGTATCCTCTTGTTGTTGCTATGTTACCTGATGTG 180
Query 181 CCTGAGGAACATAGAGAGATCTTGAGGTCTCAAGGCTGCGTTGTGCGTGAGATCGAGCCT 240
||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 181 CCTGAAGAACATAGAGAGATCTTGAGGTCTCAAGGATGCATTGTGCGTGAGATCGAGCCT 240
Query 241 GTTCATCCTCCAGATAGCCAAGATGCATACGCAAGGGCTTATTACGTTATTAACTACTCC 300
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 GTTCATCCTCCAGATAGCCAAGATGCATACGCAAGGGCTTATTACATTATTAACTACTCA 300
Query 301 AAACTGCGAATTTGGAACTTTGAAGAGTACAACAAGATGGTTTACTTAGATGGAGATATT 360
||||||||||||||||| ||||||||||||||||||||| | ||||| || | |||||||
Sbjct 301 AAACTGCGAATTTGGAATTTTGAAGAGTACAACAAGATGATCTACTTGGACGCAGATATT 360
Query 361 CAAGTCTTTGACAATATCGATGACCTCTTCGATTTGGAAGATGGCTATGTACATGGCGTG 420
|||||||||| |||||||||||||||||| ||| || ||||||||||| |||||||||||
Sbjct 361 CAAGTCTTTGGCAATATCGATGACCTCTTTGATATGCAAGATGGCTATTTACATGGCGTG 420
Query 421 TTGAGTTGTTTCTGTGAGAAAATATGGAGTTACACTCCTCTCTACTCGATCGGTTATTGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 TTGAGTTGTTTCTGTGAGAAAATATGGAGTTACACTCCTCTCTACTCGATCGGCTATTGT 480
Query 481 CAATATTGTCCAGAGAAGGTCATGTGGCCGGCCGAAATGAAATCTGCTCGTCC-TCCTCC 539
||||||||||| ||||||||| ||||||| ||||| ||| ||||||||| ||| || |||
Sbjct 481 CAATATTGTCCTGAGAAGGTCGTGTGGCCCGCCGAGATGGAATCTGCTCCTCCCTC-TCC 539
Query 540 ATACTTCAATGCTGGTATGTTTGTCTTTGAGCCTAATCCTTTGACGTATGAGAGTCTCCT 599
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 ATACTTCAATGCCGGTATGTTTGTATTTGAGCCTAATCCTTTGACGTATGAGAGTCTCCT 599
Query 600 TCATACCCTCCAGATCACACCGCCTTCACCGTTTGCGGAGCAAGATTTTCTCAATATGTT 659
||| ||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 600 TCAGACCCTCCAGGTCACACCTCCTACACCATTTGCGGAGCAAGATTTTCTCAATATGTT 659
Query 660 CTTTGAGAAAGTTTTTAAACCGGTCTCTCCGGTTTACAACCTGATTCTT-TCTGTGCTTT 718
||||| ||| || ||||||||||| |||||||| |||||||||||| || ||||||||||
Sbjct 660 CTTTGGGAAGGTCTTTAAACCGGTATCTCCGGTATACAACCTGATT-TTGTCTGTGCTTT 718
Query 719 GGCGCCATCCTGGGAATGTTGACTTGGAGAGAGTCAAAGTTGTTCATTACTGTCCACCTG 778
|||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 719 GGCGCCATCCGGGGAAGGTTGACTTGGAGAGTGTCAAAGTTGTTCACTACTGTCCACCTG 778
Query 779 GATCCAAGCCATGGAGGTACACAGGAGAAGAACCTAACATGGACAGGGAAGACGTCAAAA 838
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 GATCCAAGCCATGGAGGTACACAGGAGAAGAACCTAACATGGACAGAGAAGACGTCAAAA 838
Query 839 TGTTAATTAGGAAATGGTGGGATATCTATAACGACGAGTCTCTTGATTTCAAACCGAAAA 898
||||||||| |||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 839 TGTTAATTAAGAAATGGTGGGATATCTACAATGACGAGTCTCTTGATTTTAAACCGAAAA 898
Query 899 ACCCTGCAGATTTGGAAGCAACCCTTTCGAAATCAACAACTATAGCTTCGG-AA--G--- 952
|||||||||||||||||||||| ||| | ||||||||| ||||||||||| || |
Sbjct 899 GCCCTGCAGATTTGGAAGCAACCGTTTTGGAATCAACAATTATAGCTTCGGTAACCGAAG 958
Query 953 CACCACTTTCCTACTCTCCTGCTGCACCTTCTGCAGCTTGA 993
|||||||||||||||||||||||||||||||||| ||||||
Sbjct 959 CACCACTTTCCTACTCTCCTGCTGCACCTTCTGCCGCTTGA 999
> AT1G60470.1 | Symbols: AtGolS4, GolS4 | galactinol synthase 4
| chr1:22278975-22280586 REVERSE LENGTH=1343
Length=1343
Score = 887 bits (480), Expect = 0.0
Identities = 766/903 (85%), Gaps = 24/903 (3%)
Strand=Plus/Plus
Query 57 GAGAGCATACGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGATT 116
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 198 GAGAGCTTATGTGACGTTTTTGGCAGGAAATGGAGACTACGTGAAGGGAGTGGTGGGACT 257
Query 117 AGCAAAGGGTTTGCGGAAAGTCAAAAGTGCGTATCCTCTTGTTGTTGCTACGTTACCTGA 176
||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 258 AGCAAAGGGTTTGCGTAAGGTCAAAAGTGCGTATCCTCTTGTTGTTGCTATGTTACCTGA 317
Query 177 TGTGCCTGAGGAACATAGAGAGATCTTGAGGTCTCAAGGCTGCGTTGTGCGTGAGATCGA 236
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 318 TGTGCCTGAGGAACATAGAGAGATCTTGAGGTCTCAAGGCTGTGTCGTGCGTGAGATCGA 377
Query 237 GCCTGTTCATCCTCCAGATAGCCAAGATGCA-TACGCAAGGGCTTATTACGTTATTAACT 295
|||||| |||||||||| | ||||| || | | || | ||||||||||||| | ||||
Sbjct 378 ACCTGTTTATCCTCCAGACAACCAAGTTG-AGTTTGCCATGGCTTATTACGTTCTCAACT 436
Query 296 ACTCCAAACTGCGAATTTGGAACTTTGAAGAGTACAACAAGATGGTTTAC-TTAGATGGA 354
|||| ||||| || |||||||||||||||||||||| ||||||| | ||| || || | |
Sbjct 437 ACTCAAAACTTCGTATTTGGAACTTTGAAGAGTACAGCAAGATGATATACCTT-GACGCA 495
Query 355 GATATTCAAGTCTTTGACAATATCGATGACCTCTTCGATTTGGAAGATGGC-TATGTAC- 412
||||||||||||||||||||||||||| ||||||| |||||| |||| | ||| | |
Sbjct 496 GATATTCAAGTCTTTGACAATATCGATCACCTCTTTGATTTGTCTGATG-CATATTT-CT 553
Query 413 ATGGCGTGTTG-AGTTGTTTCTGTGAGAAAATATGGAGTTACACTC-CT-CTCTACTCGA 469
||| |||| || | | ||||||||||||||| |||||| ||||| || | || || |
Sbjct 554 ATGCCGTGATGGACT-GTTTCTGTGAGAAAACATGGAGC--CACTCGCTGCAGTATTCAA 610
Query 470 TCGGTTATTGTCAATATTGTCCAGAGAAGGTCATGTGGCCGGCCGAAATGAAATCTGCTC 529
| || ||||||||| | || || |||||||||| |||||| | || ||| ||||| | |
Sbjct 611 TTGGGTATTGTCAACAGTGCCCGGAGAAGGTCACGTGGCCAGAAGATATGGAATCTCCAC 670
Query 530 GTCCTCCTCCATACTTCAATGCTGGTATGTTTGTCTTTGAGCCTAATCCTTTGACGTATG 589
|||||||| || ||||| || ||||||||||| |||||||||| ||||||||| ||||
Sbjct 671 CTCCTCCTCTGTATTTCAACGCCGGTATGTTTGTGTTTGAGCCTAGTCCTTTGACTTATG 730
Query 590 AGAGTCTCCTTCATACCCTCCAGATCACACCGCCTTCACCGTTTGCGGAGCAAGATTTTC 649
||||||||||||| ||||| |||||||||| |||||||||||||| || ||||||||||
Sbjct 731 AGAGTCTCCTTCAGACCCTGGAGATCACACCACCTTCACCGTTTGCAGAACAAGATTTTC 790
Query 650 TCAATATGTTCTTTGAGAAAGTTTTTAAACCGGTCTCTCCGGTTTACAACCTGATTCTTT 709
|||||||||||||||||||||| | |||||| || || ||| ||||| ||| || ||
Sbjct 791 TCAATATGTTCTTTGAGAAAGTGTACAAACCGATCCCTTTGGTATACAATCTGGTT-TTG 849
Query 710 -CTGTGCTTTGGCGCCATCCTGG-GAATGTTGA-CTTGGAGAGAGTCAAAGTTGTTCATT 766
|| |||||||||| || || || ||| || || || ||||| ||||||||||||||| |
Sbjct 850 GCTATGCTTTGGCGTCACCC-GGAGAACGTGGAGCT-GGAGAAAGTCAAAGTTGTTCACT 907
Query 767 ACTGTCCACCTGGATCCAAGCCATGGAGGTACACAGGAGAAGAACCTAACATGGACAGGG 826
||||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct 908 ACTGTGCAGCTGGATCCAAGCCATGGAGATACACAGGAGAAGAAGCTAACATGGACAGAG 967
Query 827 AAGACGTCAAAATGTTAATT-AGGAAATGGTGGGATATCTATAACGACGAGTCTCTTGAT 885
||||| |||| |||||| || | |||||||||||| ||||||| || || ||||| |||
Sbjct 968 AAGACATCAAGATGTTAGTTGAT-AAATGGTGGGATGTCTATAATGATGAATCTCTCGAT 1026
Query 886 TTCAAACCGAAAAACCCTGCAGATTTGGAAGCAACCCTTTCGAAATCAA-CAACTATAGC 944
|||||| |||||| |||||||||| ||||| |||| || | ||||||| || | ||||
Sbjct 1027 TTCAAATCGAAAATCCCTGCAGATGCGGAAGAAACCGTTACAAAATCAAGCATCC-TAGC 1085
Query 945 TTC 947
|||
Sbjct 1086 TTC 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5