BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907436

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG01080.1 | Symbols: ATP9 | mitochondrial F0-ATPase subunit 9...   230    9e-60


> ATMG01080.1 | Symbols: ATP9 | mitochondrial F0-ATPase subunit 
9 | chrM:278649-279152 FORWARD LENGTH=504
Length=504

 Score =  230 bits (124),  Expect = 9e-60
 Identities = 137/143 (96%), Gaps = 2/143 (1%)
 Strand=Plus/Plus

Query  3    GTCATTCCCTCTGACGTCGAATGATCTACTTGCTTGTACTTATCTTTGTCGAGATGT-TG  61
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |  |
Sbjct  64   GTCATTCCCTCTGACGTCGAATGATCTACTTGCTTGTACTTCTCTTTGTCGAGAT-TCAG  122

Query  62   TTGGTCTTCAGTATACCACTCCGTGGGTACAAGATCGCAAAGAATGCATTCCAAGTGAGA  121
            |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  123  TTGGTCTTCAGTCTACCACTCCGTGGGTATAAGATCGCAAAGAATGCATTCCAAGTGAGA  182

Query  122  TGTCCAAGATCAAAGGAACGAGG  144
            |||||||||||||||||||||||
Sbjct  183  TGTCCAAGATCAAAGGAACGAGG  205



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5