BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907461
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60080.1 | Symbols: | 3'-5'-exoribonuclease family protein ... 1408 0.0
> AT1G60080.1 | Symbols: | 3'-5'-exoribonuclease family protein
| chr1:22152230-22154589 REVERSE LENGTH=1441
Length=1441
Score = 1408 bits (762), Expect = 0.0
Identities = 863/912 (95%), Gaps = 6/912 (1%)
Strand=Plus/Plus
Query 1 ATGGGGTTACAAGATTCATCTCAAGATTTGTCGACAGAGATGGAAGTTGATGCTTTTAGA 60
||||| ||| |||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 158 ATGGGAATACCAGATGCAGCTCAAGACTTGTCGACAGAGATGGAAGTTGATGCTTTTAGA 217
Query 61 AGAATCTTCCCTCTTCGTTTCTTTGAGCGTCATCTCTCTGAATCACTTCGACCTGATGGT 120
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 218 AGAATCTTCCCTCTTCGTTTCTTTGAGCGTCATCTCTCTGAATCTCTTCGTCCTGATGGA 277
Query 121 AGACAACTTGGAAAAGCTAGAGACACCATTGTTAACCTTGGACTTGTTTCAACTGCTGAT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 278 AGACAACTTGGAAAAGCTAGAGACACCATTGTTAATCTTGGACTTGTTTCAACTGCTGAT 337
Query 181 GGGTCTGCTCTTGCTAAGATTGGTTCTACGACTATGCTTGCTGCTATTAGAATGGAAGTT 240
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 338 GGGTCTGCTCTTGCTAAGATTGGTTCCACTACTATGCTTGCTGCTATTAGAATGGAAGTT 397
Query 241 ATGACTCCTTCTACTGATTCACCAGACGAAGGATGCATAGCTCTTGAGTTCCACATGCCT 300
|||||||||||||| || || ||||||||||||||||||||| |||||||||| ||||||
Sbjct 398 ATGACTCCTTCTACGGACTCTCCAGACGAAGGATGCATAGCTATTGAGTTCCATATGCCT 457
Query 301 CCTATTTGTTCTCCGACTGTTCGTCCTGGTAGACCAGCTGACGCTGCTCCCGTTATTTCA 360
|| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 458 CCAATTTGTTCTCCGACTGTTCGTCCTGGAAGACCAGCCGAAGCTGCTCCCGTTATTTCA 517
Query 361 AAGCGTTTGTCTGATACAATTTTAAGTTCTGGTATGATTGATCTTAAAGAACTGTGTCTA 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 AAGCGTTTGTCTGATACTATTTTAAGTTCTGGTATGATTGATCTTAAAGAACTGTGTCTA 577
Query 421 GTTAGTGGAAAAGCTGCTTGGATGGGTTATCTGGATATATATTGCCTGGATGCTGATGGT 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 578 GTTAGTGGAAAAGCTGCTTGGATGGGTTATCTGGACATATATTGCCTGGATGCTGATGGT 637
Query 481 GCTCT-TTTCGATGCTGCTCTGCTTTCTGCTGTTGCAGCCTTTTCGAATCTGCAAATTCC 539
||||| ||| ||||||||||||||| ||||||| |||||||| || ||||||||||||||
Sbjct 638 GCTCTCTTT-GATGCTGCTCTGCTTGCTGCTGTCGCAGCCTTCTCCAATCTGCAAATTCC 696
Query 540 AGTTGTTGCTCTGAATGACAATGGAAGAATAGTTGCCATCACTGGAGGAAAAGATCAAGA 599
| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 697 AATTGTTGCTCTGAATGACAATGGAAGAATAGTTGCCGTCACTGGAGAAAAAGATCAAGA 756
Query 600 CAATGCTTCT-ATCACCGAGAAAGAAGCAGTGAACAAGGAGAAGAGAAAACTTACGCTTA 658
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 CAATGCTT-TGATCACCGAGAAAGAAGCAGTGAACAAGGAGAAGAGAAAACTTACGCTTA 815
Query 659 AAAACATCCCTTTCTCTTTAACTTGCATACTCCACAAGA-CTTACATCTTAGCAGATCCA 717
| ||||| ||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 816 AGAACATTCCTTTCTCTTTAACTTGCATACTTCACAAGAACT-ACATCTTAGCAGATCCA 874
Query 718 ACAACCGAAGAAGAATCGATCATGGACACTCTAGTGACTGTCGTTTTAGATTCCTCAGAT 777
|||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| |||
Sbjct 875 ACAACCGAAGAAGAATCGATCATGGACACTCTTGTGACTGTTGTTTTGGATTCCTCGGAT 934
Query 778 CAAATGGTTTCTTTCTACAAATCAGGAGGAACCGCTCTCGCATATTCATCAGCCATCAAG 837
|||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 935 CAAATGGTTTCTTTCTACAAATCAGGAGGAGCTGCTCTCGCCTATTCATCAGCCATCAAG 994
Query 838 AGCTGTGTCGAGTTAGCAAGGAAGAGAGCGAAGGAGGTTAAGCAGATATTGGGGGAGATG 897
||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 995 AGCTGTGTCGAGTTAGCAAGGAAGAGAGCAAAGGAGCTTAAGCAGATATTGGGAGAGATG 1054
Query 898 GATATCGACTAA 909
||||||||||||
Sbjct 1055 GATATCGACTAA 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5