BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907475
Length=3114
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63740.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 928 0.0
AT1G56520.2 | Symbols: | Disease resistance protein (TIR-NBS-L... 196 8e-49
> AT1G63740.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:23645429-23648973 FORWARD LENGTH=3241
Length=3241
Score = 928 bits (502), Expect = 0.0
Identities = 1721/2282 (75%), Gaps = 193/2282 (8%)
Strand=Plus/Plus
Query 34 TGGAGATACAACGTCTTCCCTAGCTTCCACGGGCCAGACGTCCGTGTAACATTTCTAAGT 93
||||||||| ||||||| | |||||||| || || ||||||||| ||| ||||| |||
Sbjct 1 TGGAGATACCGCGTCTTCACGAGCTTCCATGGACCTGACGTCCGTAAAACCTTTCTCAGT 60
Query 94 CATTTACAAAAACAGTTTCAAC-ACAATGGGATCATAAC-T-TTCAATGATGAAGGGATC 150
||||||| ||||||||| | | |||||||| | || | | ||| ||||| ||| |||
Sbjct 61 CATTTACGTAAACAGTTT-ATCTGCAATGGGA-C-TACCATGTTCGATGATCAAGCAATC 117
Query 151 GAGAGAAGCCAAACCATTAGTTCTGAACTCACACG-GGCGATAAGAGAATCTAGAATCTC 209
|| ||| ||||||||||| ||||||||||||| || ||| || ||||| || |||||
Sbjct 118 GAAAGAGGCCAAACCATTTCCCCTGAACTCACACGAGG-GATTAGGGAATCGAGGATCTC 176
Query 210 GATCGTGGTGCTCTCGGAGAACTATGCTTCTTCAAGTTGGTGTTTGAACGAGCTGTTGGA 269
|||||| ||||||||| ||||||||||||| || || ||||||||| | |||||||||||
Sbjct 177 GATCGTAGTGCTCTCGAAGAACTATGCTTCATCGAGCTGGTGTTTGGATGAGCTGTTGGA 236
Query 270 AATTTCGAAGTGTCAA-G-A-ATCTGCGGGACAAATAGTGATGACGGTTTTCTACAAAGT 326
|||| ||| || ||| | | || | ||| |||||||||||||| || |||||| |||
Sbjct 237 GATTTTGAAATG-CAAGGAAGATAT-TGGG-CAAATAGTGATGACTGTCTTCTACGGAGT 293
Query 327 GGATCCAAGTGATGTGAGGAAACAGATGGGAGAGT-T-TGGGAAGGCTTTCAAGAAAACT 384
|||||| ||||||| | ||||| | ||||| | | | ||| | |||||||||||||
Sbjct 294 AGATCCATCTGATGTGCGCAAACAAACCGGAGA-TATCT-TGAAAGTTTTCAAGAAAACT 351
Query 385 TG-CCAAGGTAAAACAGAGGCTAAGATAC-ATAGATGGACCCAATCTTTGACCCATGTCG 442
|| | |||||||| |||| |||| | | ||||||| |||| |||||| | |||| |
Sbjct 352 TGTTC-TGGTAAAACGGAGGAGAAGAGGCGA-AGATGGAGCCAAGCTTTGAACGATGTTG 409
Query 443 CCAACATAGCCGGAGAACACTCCCTGAATTGGGACAATGAAGCAAACATGATTGAGAAGA 502
|||||| ||||||||||| | ||| || ||||| |||||| | || ||||| |||||||
Sbjct 410 GCAACATTGCCGGAGAACATTTCCTTAACTGGGATAATGAATCGAAGATGATGGAGAAGA 469
Query 503 TTGCTAGAGATGTGTCAGACAAACTAAATGCTACATTGTCTAAGGATTTTGATGGTATGG 562
|||| |||||| | ||| ||||| |||| ||||| | |||| ||||||||| | ||||
Sbjct 470 TTGCAAGAGATATTTCAAACAAAGTAAACACTACAATCTCTAGGGATTTTGAAGACATGG 529
Query 563 TAGGACTTGAAG-CTCATTTGCG-GAAAATTCAATATTTGTTACAATCAGA-AA--CTGA 617
| ||| ||| || | || || | |||||| || | ||||||||| | ||| || |||
Sbjct 530 TGGGAGTTG-AGACACACCTG-GAGAAAATACAGTCTTTGTTACATTTAGATAATGATGA 587
Query 618 TGAAGCTATGACCT-TAGGAATCTCTGGTCCTGGGGGCATTGGTAAAACTACCATTGCGA 676
||||||||||| | | ||||||| ||| |||| || |||||||| ||||||||||| |
Sbjct 588 TGAAGCTATGA-TTGTTGGAATCTATGGCCCTGCAGGTATTGGTAAGACTACCATTGCCA 646
Query 677 GAGCTTTATATAACCAAATTTCTCGCA-A-TTTTCCGCTTAGATATTTCATGGAAAATGT 734
||||||| | | | | | ||| | | | |||| ||||| | ||| ||||| ||| |
Sbjct 647 GAGCTTTGCACAGTCTACTCTCT-G-ATAGGTTTCAGCTTACTTGTTTTATGGAGAATCT 704
Query 735 TAAGGGAAGTTATAGGAATA-TTGAT-TGTGATGAGCATGGTTCAAAGCTGCGTTTACAA 792
|| |||||| ||| |||| | | | | ||| ||| |||||| ||||||| ||||||
Sbjct 705 TAGGGGAAGCTAT---AATAGTAG-TCT-TGACGAGTATGGTTTGAAGCTGCAATTACAA 759
Query 793 GAACAACTTCTTTCGC-AGATTTTGAACCACAAC-GG-AGTGAAGATATGTAACTT-AGA 848
|||||||||||||| | ||||||| ||||| ||| || | ||| | ||| || || ||
Sbjct 760 GAACAACTTCTTTC-CAAGATTTTAAACCA-AACTGGTA-TGAGGGTATACAATTTAAG- 815
Query 849 TGTTATATATGAAAGGTTACGCTG-CCAAAAGGTTCTCATCATTCTTGATGATGTGGATA 907
|| ||| | | || | || || | |||||| || || ||||||||||||||||||||
Sbjct 816 TGCAATACAGGGAATGCTATGC-GACCAAAAAGTGCTTATCATTCTTGATGATGTGGA-C 873
Query 908 GCCT-TG-AGCAATTAGATGCTTTGGCTAAGGATATCT-A-TCGTTTTGGTCATGGAAGT 963
| | || ||||| |||| ||||||||||| || | || | | | ||||||| ||| |||
Sbjct 874 G-ATCTGAAGCAACTAGAAGCTTTGGCTAATGA-AACTAAGT-GGTTTGGTCCTGGGAGT 930
Query 964 AGGATTATTGTAACTAC-GAAAGATCAAGAGCTTTT---GCAACGGT-ATGGCATCAACA 1018
||| || | || || || |||| ||||||||||||| ||||| | | | || || |
Sbjct 931 AGGGTTGTAGTGACCACAGAAA-ATCAAGAGCTTTTGAAGCAAC-ATGACGATATTAAGA 988
Query 1019 ATACATACCATGTGGGA-TTTCCAT-CTAATG-AAGAAGCTCTTGAGATCTTTTGTAGAT 1075
|||||||| |||| ||| ||||| | || | | ||||||||| | |||||||||||||||
Sbjct 989 ATACATACTATGT-GGATTTTCC-TACTCA-GAAAGAAGCTCGTCAGATCTTTTGTAGAT 1045
Query 1076 ATGCTTTT-AGGAGAAGCTCTCCACTTTATGGTTTTGAAAAGC-TTGCAATAAGAGTAAC 1133
||| |||| | || ||| |||||| ||||||| ||||| | || | | |||||| |
Sbjct 1046 ATGGTTTTAAACAG-AGCACTCCACAAGATGGTTTCGAAAATCTTTCCGA-AAGAGTTAT 1103
Query 1134 AGAGCTTTGCAGTAATCTTCCATTAGGACTCCGTGTTGTGGGTTCATCTTTACGCGGGAA 1193
| |||||||||| || |||||| |||| || |||| |||||| || | || || ||
Sbjct 1104 AAAGCTTTGCAGCAAACTTCCACTAGGTCTTAGTGTCATGGGTTTATATCTA--CGAAAA 1161
Query 1194 ATG--TGAGGATGAATGGAAAGTTATAATGAATAGGCTAG-AA--A-C--T-AGTC--TT 1242
| | || ||||| ||| ||| |||| || ||||||||| || | | | | || ||
Sbjct 1162 AAGACAGAAGATGACTGGGAAGATATACTGCATAGGCTAGAAAGTAGCTTTGATTCAGTT 1221
Query 1243 GATGGAGATCTCGAGAGAGTGTTAAGAGTCGGATACGATAGTTTACATGAGAAAGATCAA 1302
||| || || |||||||||| ||||||||||||| || ||||||||||||| ||||||
Sbjct 1222 GATCGAAATATCGAGAGAGTACTAAGAGTCGGATATGACGGTTTACATGAGAAGGATCAA 1281
Query 1303 GCT-CTGTTTCTTCACATCGCAATCTTCTTCAACTACAAAGACGAAGATTATGTAAAAGC 1361
| | ||||| | ||| ||| |||||||||||||||||||||| ||| |||| |||||
Sbjct 1282 -TTGTTATTTCTCCTCATTGCATTCTTCTTCAACTACAAAGACGATGATCATGTGAAAGC 1340
Query 1362 CATACTCGGTGAGGATAATTTGGATGTCGA-ACAT-GGGTTGAGAAAC-CT--AGTCAAT 1416
|| || | ||| |||| ||| ||||| | || | || |||| |||| || ||| ||
Sbjct 1341 AATGCTTGCTGACAATAACTTGAATGTC-AGAC-TCGGTTTGA-AAACTCTCGAGT--AT 1395
Query 1417 AGATCTCTCAT--AGACATC-TCTACCAATGGAGATATAGTAATGCACAAATTACTACAA 1473
| |||||| || | | ||| ||| | ||| ||||||| |||||||| |||||||||
Sbjct 1396 AAATCTCTTATACAAAGATCGTCT--GGA-GGAAATATAGTGATGCACAAGTTACTACAA 1452
Query 1474 CAAATGGGTAGACAAGCCATTCATAGACAAGAACCTTGGAAACGCCAAATCTTAATTGAT 1533
||| |||||||| |||| |||| |||||||| |||||||||||||||||||||||||||
Sbjct 1453 CAAGTGGGTAGAGAAGCGGTTCAAAGACAAGAGCCTTGGAAACGCCAAATCTTAATTGAT 1512
Query 1534 GCTCATGAGATTTGTGATGTCCTTGAATA-TGATACAGGTACTAG-AACCGTGGCTGG-C 1590
||||||||||||||| ||||||| ||| | |||| | ||| | | || ||| ||| |
Sbjct 1513 GCTCATGAGATTTGTAATGTCCTCGAA-ACTGATTCTGGTTGT-GCAAATGTGA-TGGGC 1569
Query 1591 ATATCATTTGATGCATCCA-ATATCAGCAAA-GT-GTT--TGTAAGCG-AAGGAGCTTT- 1643
||||| ||| ||| ||| | | ||| | || | || | |||||| || ||||||
Sbjct 1570 ATATCCTTTAATGTATCTACA-ATCC-CGAATGGCGTGCATATAAGCGCAAA-AGCTTTT 1626
Query 1644 CAAGAGAATGCGTAACCTTCAATTCCTCAG--TGTA--AG-C--GA--TGA---AAA--T 1689
||| | | ||||||| |||| ||| || || | || || | || ||| ||| |
Sbjct 1627 CAAAATA-TGCGTAATCTTCGATTTCTAAGCATCTACGAGACAAGACGTGATGTAAACCT 1685
Query 1690 GACAG-AATTTGCATACCAGAGGACTTGCAGTTCCCACCTCGTCTAAAGT-TACTACATT 1747
| || || | | |||| || ||| || | ||||||| |||||||| || | ||||||
Sbjct 1686 TAGAGTAAAT-G--TACCCGATGACATGGATTTCCCACATCGTCTAAGGTCTT-TACATT 1741
Query 1748 GGGAGGCATACCCGAG-AAAGAGTCTTCCTAT-TAGATTTTAT-CTGGAAAATCTCGTTG 1804
|||||| |||||| || |||| ||||||| | || |||| | | ||| |||| || |
Sbjct 1742 GGGAGGTATACCC-AGGAAAGTCTCTTCCT-TCTACATTT-AGGCCAGAATATCTTGTGG 1798
Query 1805 AACTCGA-TATGCAGAATAGCCAA-CTCGAGAAGCTCTGGAAAGGACCCCAGC-TGCTTA 1861
||||| | | |||| |||| | || || |||||||| ||| ||||| |||||| | ||||
Sbjct 1799 AACTCAACT-TGCAAAATAAC-AAGCTAGAGAAGCTTTGGGAAGGAACCCAGCCT-CTTA 1855
Query 1862 CAAATCTCAAGAAGATGGATTTGTCGATG--TCCC-GTCATTTGAAAGAACTCCCAGATC 1918
|||||||||| ||| |||| |||| | || ||| | ||| ||| ||||| |||||||
Sbjct 1856 CAAATCTCAACAAGTTGGAATTGT-G-TGGGTCCTTGAGATT-GAAGGAACTTCCAGATC 1912
Query 1919 TTTCCAA-TGCCACAAATCTCAAGAGATT-GAATTTAGA-TGATTGC-GAGAGTTTGGTA 1974
|||| || ||| ||||||||||||||| | || | || | || ||| | ||||||||||
Sbjct 1913 TTTC-AAGTGCTACAAATCTCAAGAGACTAGA-TCTA-ACTGGTTGTTG-GAGTTTGGTA 1968
Query 1975 GAGATTCCCTCCTCTTTTTCAAATCTTCACAAACTAAAAGTGTTG-AGCATG--TTTGCC 2031
|||||||| |||||| || |||||||||||||||| ||| |||| || ||| |||
Sbjct 1969 GAGATTCCTTCCTCTGTTGGAAATCTTCACAAACTAGAAGAGTTGGAG-ATGAATTTATG 2027
Query 2032 TGCACGAAGTTAGAAGTCATTCCAACTCGCATGAACTTGGCATCTCTT-GAATCAGTCAA 2090
| || | | || |||| |||| |||| | | ||||||||||||||| || ||| |||
Sbjct 2028 TTTAC-A-GCTACAAGTTGTTCCGACTCACTTCAACTTGGCATCTCTTAGA-TCACTCAG 2084
Query 2091 TATGACGGCATGCCAAAGA-TTGAA--AAACTTTCCAGACATCTCTAGGAACATCTTACA 2147
||| || |||| || || || ||| ||||||| || |||| ||||||| |||
Sbjct 2085 GATGTTGGGATGCTGG-GAATT-AAGGAAA-TTTCCAGGTATTTCTACGAACATC--ACA 2139
Query 2148 ACTCTC-TA-TCTCAC-T-CACAGCGGTAGAACAAGTGCCTGCATCAATTAGGCTTTGGT 2203
| ||| || || | | || | | ||||| || ||| || |||||||||||||||||
Sbjct 2140 TCCCTCGTAATCGGAGATGCA-AT-GTTAGAAGAAATGCTTGAATCAATTAGGCTTTGGT 2197
Query 2204 CT 2205
||
Sbjct 2198 CT 2199
> AT1G56520.2 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:21174664-21178974 REVERSE LENGTH=3624
Length=3624
Score = 196 bits (106), Expect = 8e-49
Identities = 334/439 (76%), Gaps = 36/439 (8%)
Strand=Plus/Plus
Query 1703 TACCAGAGGACTTGCAG-TTCCCACCTCGTC-TAAAGTTACTACATTGGGAGGCATACCC 1760
|||||||||| || || || ||| || | | ||| ||||||||||||||||||||||||
Sbjct 1775 TACCAGAGGAGATGGAGCTT-CCATCTAG-CATAAGGTTACTACATTGGGAGGCATACCC 1832
Query 1761 GAGAAAGAGTCTTCCTATTAGATTTTATCTGGAAAATCTCGTTGA-ACTCGATATGCAGA 1819
|||||| | |||| | | |||||| || ||||||||||| | |||| | ||| ||
Sbjct 1833 GAGAAA-A-TCTT--T-T-AGATTTGGTCCAGAAAATCTCGTC-ACACTCAACATGGAGT 1885
Query 1820 ATAGCCAACTCGAGAAGCTCTGGAAAGGACCCCAGCTGCTTACAAATCTCAAGAAGATGG 1879
| || | ||||||||||| ||||||||| | |||| ||| ||||||||||| |||||
Sbjct 1886 ACAGTGAGCTCGAGAAGCTATGGAAAGGAACTCAGCCACTTGCAAATCTCAAGGAGATGA 1945
Query 1880 ATTTGTCGATGTCCCGTCAT-TT-GAAAGAACTCCCAGATCTTTCCAATGCCA-CAAATC 1936
| |||| | || | || | || ||| ||||||||||||||||| || || | ||||||
Sbjct 1946 ACTTGT-G-TGGGTCATCTTGTTTGAAGGAACTCCCAGATCTTTCGAAAGC-AGCAAATC 2002
Query 1937 TCAAGAGATTGAATTTAGATGATTGCGA-GAGTTTGGTAGAGATTCCCTCCTCTTTTTCA 1995
| |||||||| || | | ||| ||| | | ||||||||||||||| ||||| || |
Sbjct 2003 TGGAGAGATTGGATGTGGCTGAGTGCAATGC-TTTGGTAGAGATTCCATCCTCAGTTGCG 2061
Query 1996 AATCTTCACAAACTAA--AAGTGTTGAGCATGTT-TGCCTGCACGAA-GT-TAGAAGTCA 2050
|||||||||||| || || | | | |||| | |||| ||| || |||||||||
Sbjct 2062 AATCTTCACAAAATAGTTAACT-TACA-CATGGAAT-CCTGT--GAAAGTCTAGAAGTCA 2116
Query 2051 TTCCAACTCGCATGAACTTGGCATCTCTTGA-ATCAGTCAATATGACG-GCAT-GCCAAA 2107
||||||||| ||| ||||||||||||||| | || | |||| || || | || ||| |
Sbjct 2117 TTCCAACTCTCATCAACTTGGCATCTCTTAAGATTA-TCAACAT-ACATG-ATTGCCCAC 2173
Query 2108 GATTGAAAAACTTTCCAGA 2126
| ||||||| ||||||||
Sbjct 2174 GGTTGAAAAGTTTTCCAGA 2192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 154865353041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5