BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907478
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59970.1 | Symbols: | Matrixin family protein | chr1:220735... 1450 0.0
> AT1G59970.1 | Symbols: | Matrixin family protein | chr1:22073534-22074876
FORWARD LENGTH=1343
Length=1343
Score = 1450 bits (785), Expect = 0.0
Identities = 963/1049 (92%), Gaps = 12/1049 (1%)
Strand=Plus/Plus
Query 11 TGAATCCAATCTCAGCCAAATTCTACTCCAACGTCTCTTCAATTCCACCGTTACAATTCC 70
|||||||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 111 TGAATCCAATCTCAGCAAAATTCTACACTAACGTCTCTTCAATCCCACCGTTACAATTCC 170
Query 71 TAAACGCAACACAAAACGCATGGGAAACATTCTCAAAACTCGCCGGTTGTCACATCGGAG 130
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 171 TAAACGCAACGCAAAACGCATGGGAAACATTCTCCAAACTCGCCGGTTGTCACATCGGAG 230
Query 131 AAAATATCAACGGTCTCTCAAAACTCAAACAATACTTTCGCCGTTTCGGTTACATCACCG 190
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 231 AAAATATCAACGGCCTCTCAAAACTCAAACAATACTTTCGCCGTTTCGGTTATATCACCA 290
Query 191 GTACCAATAATTGCACAGACGATTTTGATGACGTACTTCAATCGGCGATCAATACTTACC 250
||| ||||||||| |||||||| |||||||| |||||||| |||||||| |||||||
Sbjct 291 CCACCGGTAATTGCACTGACGATTTCGATGACGTGCTTCAATCAGCGATCAACACTTACC 350
Query 251 AGAAAAATTTCAATCTCAAAGTCACCGGAAAACTCGATTCGTCGACTCTCCGGCAAATCG 310
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 351 AGAAAAATTTCAATCTCAAAGTCACCGGAAAACTCGATTCCTCGACTCTCCGGCAAATCG 410
Query 311 TTAAACCGAGATGCGGGAATCCGGATATGATCGACGGAGTTTCGGAGATGAACGGTGG-A 369
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
Sbjct 411 TTAAACCGAGATGCGGGAATCCGGATTTGATCGACGGGGTTTCGGAGATGAACGGTGGTA 470
Query 370 AAAAAGCTTCGTGCGACGGAGCGGTACTCGTTTTTCCCCGGGAAGCCACGGTGGCCGAAA 429
| | | || ||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 471 AGATA-CTCCGTACGACTGAGAAATACTCGTTTTTCCCCGGGAAGCCACGGTGGCCGAAA 529
Query 430 CGGAAACGCGATCTGACTTACGCGTTTGTGCCGCAGAATAATCTAACCGACGAGGTTAAA 489
|||||||| ||||||||||| ||||||| ||||||||||||| |||| ||||||||||||
Sbjct 530 CGGAAACGAGATCTGACTTATGCGTTTGCGCCGCAGAATAATTTAACAGACGAGGTTAAA 589
Query 490 CGCGTGTT-TGCACGCGCCTTCACGCGTTGGGCTGAGGTGACTCCGTTGAATTTCACGCG 548
|||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 590 CGCGTGTTCT-CACGCGCCTTCACGCGTTGGGCGGAGGTGACTCCGTTGAATTTCACGCG 648
Query 549 CTCTGAGTCTCTCCTCGGAGCTGATATAGTGATCGGATTTTTCTCCGGTGAACATGGTGA 608
|||||||||| ||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 649 CTCTGAGTCTATCCTCCGTGCGGATATAGTGATCGGATTTTTCTCCGGTGAACATGGTGA 708
Query 609 TGGAGAGCCGTTTGATGGAGCGATGGGAACATTAGCGCACGCTTCGTCTCCTCCTACGGG 668
||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||
Sbjct 709 TGGAGAGCCGTTTGATGGAGCTATGGGAACATTAGCGCATGCTTCTTCGCCTCCTACGGG 768
Query 669 GATGTTACATTTAGACGGTGATGAGGATTGGTTGATCTCTGACGGTGAAATTAGCCGTCG 728
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 769 GATGTTACATTTAGACGGTGATGAGGATTGGTTGATCTCTAACGGTGAAATTAGTCGTCG 828
Query 729 GGTTTTACCGGTGACGTCGGTGGTGGATCTTGAATCGGTGGCGGTACATGAGATCGGACA 788
| | |||||||||||| ||||||||||||||||||||||||| || |||||||| || ||
Sbjct 829 GATATTACCGGTGACGACGGTGGTGGATCTTGAATCGGTGGCTGTTCATGAGATTGGTCA 888
Query 789 TCTTTTAGGGTTAGGTCACTCGTCGGTGGAAGATGCGATTATGTTTCCGGCGATTTCTGG 848
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCTTTTAGGGCTAGGTCATTCGTCGGTGGAAGATGCGATTATGTTTCCGGCGATTTCTGG 948
Query 849 TGGCGATCGGAAAGTGGAGTTAGCGAAGGATGATATTGAAGGGATTCAGCATTTGTACGG 908
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 949 TGGAGATCGGAAAGTGGAGTTAGCTAAGGATGATATCGAAGGGATTCAGCATTTGTACGG 1008
Query 909 AGGAAATCCGAACGGAGACGGTGGTGTTTCGAAGCCTAGCCGGGAGAATGAATCCACCGG 968
|| |||||||| ||||||||||||| |||||| |||||||| |||| | |||| |||||
Sbjct 1009 TGGTAATCCGAATGGAGACGGTGGTGGTTCGAAACCTAGCCGTGAGAGTCAATCTACCGG 1068
Query 969 TGGCGCTGGTGATAGCGTTCGTCGGTGGAGTGGGTTGG-TGTTTATCCTATCATCGATTG 1027
||| || ||||||||||||||||||| |||| || || ||| | ||||||||||||
Sbjct 1069 TGG---TG---ATAGCGTTCGTCGGTGGAGAGGGT-GGATGATTAGCTTATCATCGATTG 1121
Query 1028 CCACGTGTCTATGGTTGATTTGTGTTTAG 1056
|||||||| ||| ||||||| |||||||
Sbjct 1122 CCACGTGTATATTCTTGATTTCTGTTTAG 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5