BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907480
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59950.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 1155 0.0
AT1G59960.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 782 0.0
> AT1G59950.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:22068033-22070588 REVERSE LENGTH=963
Length=963
Score = 1155 bits (625), Expect = 0.0
Identities = 848/951 (89%), Gaps = 34/951 (4%)
Strand=Plus/Plus
Query 3 GTTCTCAATCGGATCTGCCCATCACTTGATGCCGGTTCTAGCTCTAGGAACGGCTGCGTC 62
|||| | |||||||| | |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 15 GTTCCCTATCGGATCCGTTCATCACTTGATGCCGGTTCTAGCTCTTGGAACTGCTGCGTC 74
Query 63 TCCTCCGCCGGAACCGATAGTGTTGAGAA-AAACGGTGTTGGAGGCCATCAAGCTCGGTT 121
|||||| || ||||| |||||||||| || ||||||||||| ||||||||||||||||
Sbjct 75 TCCTCCACCCGAACCAATAGTGTTGA-AACGGACGGTGTTGGAAGCCATCAAGCTCGGTT 133
Query 122 ATCGTCACTTCGACACGTCTCCGAGGTACCAGACAGAGGAGCCGCTCGGCGAAGCTCTGG 181
|||||||||||||||| ||||| ||||||||||| ||||| ||||| || |||||| |||
Sbjct 134 ATCGTCACTTCGACACCTCTCCTAGGTACCAGACGGAGGAACCGCTTGGTGAAGCTTTGG 193
Query 182 CGGAAGCAGTTTCTCTAGGCTTAGTCCAATCTCGATCGGAACTCTTTGTCACTTCTAAGC 241
|||| || |||||||| || ||| ||||||||||||| |||||||| |||||||||||||
Sbjct 194 CGGAGGCGGTTTCTCTCGGGTTAATCCAATCTCGATCAGAACTCTTCGTCACTTCTAAGC 253
Query 242 TATGTTGTGTTGATGTTCATGTTGGCCTTGTTGTACCGGCGATTCAACAGAGTTTGGAAA 301
|||| |||| |||| ||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct 254 TATGGTGTGCCGATGCTCATGGTGGCCTTGTTGTACCGGCGATCCAACGGAGTTTGGAAA 313
Query 302 CTCTTAAACTGGACTATCTCGATCTCTACCTAATTCATTGGCCGGTTAGCTCGAAACCTG 361
|||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 314 CTCTTAAATTGGACTATCTCGATCTCTACCTAATCCACTGGCCGGTTAGCTCGAAACCTG 373
Query 362 GTAAATACAAGTTTCCTATTGAAGAAGATGATTTTTTGCCAATGGATTATGAAGCAGTAT 421
||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||| |
Sbjct 374 GTAAATACAAGTTCCCTATAGAAGAAGATGACTTTTTGCCAATGGATTATGAAACAGTTT 433
Query 422 GGTCTGAGATGGAAGAGTGTCAGAGACTCGGAGTTGCAAAGTGTATAGGAGTAAGCAACT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GGTCTGAGATGGAAGAGTGTCAGAGACTCGGAGTTGCAAAGTGTATAGGAGTAAGCAACT 493
Query 482 TCTCGTGCAAGAAGCTCCAACATATCCTCTC--T-GCCAAAAT--C-CC-A----C---C 527
|||| |||||||| |||||||| ||||| || | || ||||| | || | | |
Sbjct 494 TCTCATGCAAGAAACTCCAACACATCCTTTCAATAGCAAAAATCCCACCTAGTGTCAATC 553
Query 528 ---T--AG-T--GT-CA--AT--C-A-A-AGAAAACTGAGGGAACTT-TGTAAGTCTAAA 570
| || | || || || | | | ||||||||||||| | || |||||||| |||
Sbjct 554 AAGTGGAGATGAGTCCAGTATGGCAACAGAGAAAACTGAGGG-AGTTATGTAAGTCGAAA 612
Query 571 GGCATTGTTGTGACAGCTTATTCGGTGTTGGGATCTAGAGGAGCTTTTTGGGGAACTCAC 630
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 613 GGCATTGTTGTGACAGCTTATTCGGTGTTGGGATCGAGAGGAGCGTTTTGGGGAACTCAC 672
Query 631 AAAATCATGGAGTCTGATGTTCTCAAAGAAATTGCTGTGGCAAAGGGAAAAACAGTAGCA 690
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 673 AAAATCATGGAGTCTGATGTTCTCAAAGAAATTGCTGAGGCAAAGGGAAAAACAGTAGCT 732
Query 691 CAGATGAGTATGAGATGGGCTTATGAACAAGGAGTGAGCATGGTGGTGAAGAGCTTTACC 750
||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 733 CAGGTGAGTATGAGATGGGCTTACGAGGAAGGAGTGAGCATGGTGGTGAAGAGCTTTAGG 792
Query 751 AAAGAGAGGCCGGAAGAGAATCTGAAGATATTTGATTGGTCTTTGACAGAGGAGGAGAAA 810
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 AAAGACAGATTGGAAGAGAATCTGAAGATATTTGATTGGTCTTTGACAGAGGAGGAGAAA 852
Query 811 CAGAGAATTTCGACGGAGATTTCTCAGAGCAGGATCGTTGACGGAGAGGTTTATATCTCA 870
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 853 CAGAGAATCTCGACGGAGATTTCTCAGAGCAGGATCGTTGACGGAGAGGTTTACATCTCG 912
Query 871 GAGAACGGTTCTATAAAATCTGTCACCGAGATGTGGGACGGTGAGATATGA 921
||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 913 GAGAAAGGTCCTATAAAATCTGTCACCGAGATGTGGGACGGTGAGATCTGA 963
> AT1G59960.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:22071292-22073147 REVERSE LENGTH=1179
Length=1179
Score = 782 bits (423), Expect = 0.0
Identities = 776/940 (83%), Gaps = 50/940 (5%)
Strand=Plus/Plus
Query 22 CATCACTTGATGCCGGTTCTAGCTCTAGGAACGGCTGCGTCTCCTCCGCCGGAACCGATA 81
||||||| |||||||||||| | | | ||||| || || ||||| | |||||||| | |
Sbjct 132 CATCACTCGATGCCGGTTCTTGGTTTTGGAACCGCCGCTTCTCCGCTACCGGAACC-A-A 189
Query 82 -G-TGTTGAGAA-AAACGGTG-TTGGAGGCCATCAAGCTCGGTTATCGTCACTTCGACAC 137
| || ||| || | |||||| || ||||| || ||||| |||||||| || ||||||||
Sbjct 190 CGATGCTGA-AAGAGACGGTGATT-GAGGCTATTAAGCTTGGTTATCGCCATTTCGACAC 247
Query 138 GTCTCCGAGGTACCAGACAGAGGAGCCGCTCGGCGAAGCTCTGGCGGAAGCAGTTTCTCT 197
||||| |||||||| || ||||||||| ||||||||||| | ||||| || ||||| ||
Sbjct 248 CTCTCCAAGGTACCAAACGGAGGAGCCGATCGGCGAAGCTTTAGCGGAGGCGGTTTCACT 307
Query 198 AGGCTTAGTCCAATCTCGATCGGAACTCTTTGTCACTTCTAAGCTATGTTGTGTTGATGT 257
|||||||| | ||||||||| ||| ||||||||||| | || || || |||| |||||
Sbjct 308 CGGCTTAGTTCGATCTCGATCTGAATTCTTTGTCACTACCAAACTTTGGTGTGCTGATGC 367
Query 258 TCATGTTGGCCTTGTTGTACCGGCGATTC-AACAGAGTTTG-GAAACTCTTAAACTGGAC 315
||||| ||| || || |||||||||| || ||| ||||||| |||| ||||||||||||
Sbjct 368 TCATGGTGGTCTCGTCGTACCGGCGA-TCAAACGGAGTTTGAAAAAC-CTTAAACTGGAC 425
Query 316 TATCTCGATCTCTACCTAATTCATTGGCCGGTTAGCTCGAAACCTGGTAAATACAAGTTT 375
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TATCTTGATCTTTATATAATTCATTGGCCGGTTAGCTCGAAACCTGGTAAATACAAGTTT 485
Query 376 CCTATTGAAGAAGATGATTTTTTGCCAATGGATTAT-GAAGCAGTATGGTCTGAGATGGA 434
|||||||| |||||||||||| |||||||||||| | |||| ||| |||||||| |||||
Sbjct 486 CCTATTGATGAAGATGATTTTATGCCAATGGATT-TCGAAGTAGTGTGGTCTGAAATGGA 544
Query 435 AGAGTGTCAGAGACTCGGAG-TTGCAAAGTGTATAGGAGTAAGCAACTTCTCGTGCAAGA 493
|||||||||||||| || | | ||||| || |||||||||||||| || || || ||||
Sbjct 545 GGAGTGTCAGAGACTTGG-GCTCGCAAAATGCATAGGAGTAAGCAATTTTTCATGTAAGA 603
Query 494 AGCTCCAACATAT-C-CTCTCT-GCCAAAAT--C-CC-A----C---C----T-AG-T-- 531
|||| ||||| || | |||| | || | ||| | || | | | | || |
Sbjct 604 AGCTTCAACACATACTCTCTATCGCGACAATCCCGCCTAGCGTCAATCAAGTTGAGATGA 663
Query 532 GT-C-A-AT-----CAAAGAAAACTGAGGGAACTTTGTAAG-TCTAAAGGCATTGTTGTG 582
|| | | || |||||||| || ||||| |||||| || || || | |||||||||
Sbjct 664 GTCCAATATGGCAACAAAGAAAGCTAAGGGAGCTTTGT-AGATCGAACGACATTGTTGTC 722
Query 583 ACAGCTTATTCGGTGTTGGGATCTAGAGGAGCTTTTTGGGGAACTCACAAAATCATGGAG 642
||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 723 ACAGCGTACTCGGTGTTGGGATCTAGAGGAGCTTTTTGGGGAACTCCCAAAATTATGGAA 782
Query 643 TCTGATGTTCTCAAAGAAATTGCTGTGGCAAAGGGAAAAACAGTAGCACAGATGAGTATG 702
|||||||||||||||||||| || | ||||||| ||||||||| || ||| ||||||||
Sbjct 783 TCTGATGTTCTCAAAGAAATAGCAGAAGCAAAGGAAAAAACAGTGGCCCAGGTGAGTATG 842
Query 703 AGATGGGCTTATGAACAAGGAGTGAGCATGGTGGTGAAGAGCTTTACCAAAGAGAGGCCG 762
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 843 AGATGGGCTTATGAACAAGGAGTGAGCATGGTAGTGAAGAGCTTTACCAAAGAGAGATTA 902
Query 763 GAAGAGAATCTGAAGATATTTGATTGGTCTTTGACAGAGGAGGAGAAACAGAGAATTTCG 822
||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 903 GAAGAGAATCTAAAGATATTTGATTGGTCTTTGACAGAGGATGAGACACAGAGAATTTCA 962
Query 823 ACGGAGATTTCTCAGAGCAGGATCGTTGACGGAGAGGTTTATATCTC-AGAGAACGGTTC 881
|| |||||| ||||| ||| | ||| ||||||||||||||| ||| | |||| ||| |
Sbjct 963 ACTGAGATTCCTCAGTTCAGAAACGTCCACGGAGAGGTTTATACCTCTA-AGAAAGGTCC 1021
Query 882 TATAAAATCTGTCACCGAGATGTGGGACGGTGAGATATGA 921
|| ||||||||| |||||||||||||||| ||||| |||
Sbjct 1022 CATCAAATCTGTCGCCGAGATGTGGGACGGGGAGATCTGA 1061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5