BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907481
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59940.1 | Symbols: ARR3 | response regulator 3 | chr1:22065... 957 0.0
> AT1G59940.1 | Symbols: ARR3 | response regulator 3 | chr1:22065617-22066973
REVERSE LENGTH=1051
Length=1051
Score = 957 bits (518), Expect = 0.0
Identities = 624/676 (92%), Gaps = 3/676 (0%)
Strand=Plus/Plus
Query 1 ATGGCTAAAGACGGTGGCTTTTCTTGTCTACGAAGATCAGAGATGATCGGTATAGGAATC 60
||||| |||||||||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct 79 ATGGCCAAAGACGGTGGCGTTTCTTGTCTACGAAGGTCGGAGATGATCGGTATAGGAATC 138
Query 61 GGAGAACTTGAATCTCCACCGTTAGATTCTGATCAGGTCCACGTTCTCGCCGTTGATGAC 120
||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 139 GGAGAACTTGAATCTCCGCCGCTAGATTCTGATCAAGTCCACGTTCTCGCCGTTGATGAC 198
Query 121 AGCCTCCTTGATAGAATCGTCATCGAAAGATTGCTTCGAATCACATCCTGCAAAGTCACG 180
||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 AGCCTAGTTGATCGAATAGTCATCGAAAGATTGCTTCGAATCACATCCTGCAAAGTCACG 258
Query 181 GCGGTTGATAGCGGATGGCGTGCTCTCGAATTCTTAGGATTGGACGACAAGAAAGCCGCC 240
||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 259 GCGGTTGATAGCGGATGGCGTGCTCTCGAATTCTTAGGATTAGACGACGACAAAGCCGCC 318
Query 241 GTCGAATTCGATAGATTGAAGGTTGATTTGATCATCACTGATTATTGTATGCCTGGAATG 300
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 319 GTCGAATTCGATAGATTGAAGGTGGATTTGATCATCACTGATTACTGTATGCCTGGAATG 378
Query 301 ACTGGATACGAACTTTTGAAGAAGATTAAGGAATCGACAAGTTTTAAGGAAGTTCCTGTT 360
||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 379 ACTGGATACGAGCTTCTGAAAAAGATTAAGGAATCGACAAGTTTTAAGGAAGTTCCTGTT 438
Query 361 GTAATTATGTCGTCGGAGAATGTAATCACTCGTATCGACAGATGTCTCGAAGAAGGTGCG 420
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 439 GTAATTATGTCGTCGGAGAATGTAATGACTCGTATCGACAGATGTCTTGAAGAAGGTGCG 498
Query 421 GAGGATTTTTTACTAAAACCGGTGAAGCTCGCCGACGTGAAACGTCTGAGGAATTACTTG 480
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 499 GAGGATTTTTTACTAAAACCGGTGAAACTCGCCGACGTGAAACGTCTGAGGAGTTACTTG 558
Query 481 ACTAAAGACGTTAAAGTTGCCGCCGACGGAAACAAACGGAAGCTCACTACTCCTCCTCCG 540
|| | |||||||||||| |||||||| ||||||||||||||||| || ||||| || |||
Sbjct 559 ACGAGAGACGTTAAAGTCGCCGCCGAAGGAAACAAACGGAAGCTGACCACTCCACCGCCG 618
Query 541 CCGCC---GCTCTCATCCACATCCTCGATGGAATCTTTGGACTCAACGGTGGAATCGTCT 597
||||| ||||||| ||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct 619 CCGCCTCCGCTCTCAGCCACATCCTCGATGGAATCTTCGGACTCTACGGTGGAATCGCCT 678
Query 598 CTATCTTTGGTTGTTGACGATGATTCGTTGATAATGTCGCCGGAATCTTCAACGTCGCCG 657
|| ||| |||||| || || |||||||||| |||||||||||| ||| |||| ||||
Sbjct 679 CTGTCTATGGTTGACGATGAAGATTCGTTGACAATGTCGCCGGAGTCTGCAACTTCGCTT 738
Query 658 GTGAACTCGCCGATGA 673
||| | ||||||||||
Sbjct 739 GTGGATTCGCCGATGA 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5