BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907482
Length=2766
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59910.1 | Symbols: | Actin-binding FH2 (formin homology 2)... 3795 0.0
> AT1G59910.1 | Symbols: | Actin-binding FH2 (formin homology
2) family protein | chr1:22053951-22057052 REVERSE LENGTH=3006
Length=3006
Score = 3795 bits (2055), Expect = 0.0
Identities = 2577/2818 (91%), Gaps = 80/2818 (3%)
Strand=Plus/Plus
Query 1 ATGTCTTTTCTTTTCCGTAAGAACGGAAGTAGTTCACGGAGGAAGATCAAAGAAAAACTT 60
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGTTTCTTTTCCGTAAGAACGGTAGTAGTTCACGGAGGAAGATCAAAGAAAAACTC 60
Query 61 CGTGGTCGGCACTCAGATCGCGGTGGAAAAAGAGAAGAAGATGAGAGAGTCTACGGCGGC 120
|||||||| ||||||||||| ||||| || |||||||||||||||||| |||||||||
Sbjct 61 CGTGGTCGTCACTCAGATCGAGGTGGGAAGAGAGAAGAAGATGAGAGA---TACGGCGGC 117
Query 121 TCCGGCTCCGATTCGTTACCACCACCACCGTCTCCTTGGGGTTTTCTCTTCCCGGATGAT 180
||||||||||| | ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 118 TCCGGCTCCGA-T--TTACCTCCACCACCGTCTCCTTGGGGATTTCTCTTCCCGGAGGAT 174
Query 181 TTTGTTCGAATTGACGGAAATCTCAAAGCTGTTATTGTAGATGATGAAGGATTAGATGTG 240
||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TTTGTAAGAATCGACGGGAATCTCAAAGCTGTTATTGTAGATGATGAAGGATTAGATGTG 234
Query 241 GTTTACTGGAAAAAGCTTCTAGAGTTGGAAAATAGCGGGAAAATTAGAAAAAACCCTAAA 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 ATTTACTGGAAGAAGCTTCTAGAGTTGGAAAATAGCGGGAAAATTAGAAAAAACCCTAAA 294
Query 301 CCTAGAAGAAGAGGAGATAAATCCGGTGACGGATTTAGAAGAACTGGAGTAGATCAAGAC 360
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 295 CCTAGAAGAAGAGGAGACAAATCCGGTGACGGATTTAGAAGAACTGGAGCAGATCAAGAC 354
Query 361 G---AC---GA---CGACGATG-A-T----GATGAATCTATCGAAGAGACGTTTTCGTTT 405
| || || || |||| | | |||||||||||||||||| |||||||||||
Sbjct 355 GATAACGATGATGGTGATGATGAAGTAGGAGATGAATCTATCGAAGAGGCGTTTTCGTTT 414
Query 406 CATACGAAAAAATCTCAATCT-C--C-T--TCAGGTGGTGAAATTAGAGATCAGAGTAAT 459
||| |||||||||||||||| | | | ||||||||||||||||||||||||||||||
Sbjct 415 CATGTGAAAAAATCTCAATCTGCGTCATCGTCAGGTGGTGAAATTAGAGATCAGAGTAAT 474
Query 460 AAtggtggtggaggtggaggtggaggtggaggaggaggaAGATATTATACTTCTTCTTCT 519
||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 475 AATGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATACTATACTTCTTCTTCT 534
Query 520 GGTTCACCGTCACGACCTTCTTCTTCTTCTACATCTGCTGCTTCGCCGTCACGAACTTCT 579
| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 535 GCTTCTCCGTCACGACCTTCTTCTTCTTCTGCATCTGCTGCTTCGCCGTCGCGAACTTCC 594
Query 580 TATGCTACAAGCGCTGGTAGTGATTATGGTGGT-GT--T-G-GGAAAA-AATCTCAATCT 633
||||||||||| || |||||||||||||||||| || | | |||||| ||||||||||
Sbjct 595 TATGCTACAAGTGCCGGTAGTGATTATGGTGGTGGTGGTGGTGGAAAACAATCTCAATCC 654
Query 634 AAATTTCAAGCTCCTGGCGGCGGTTCATTTCCCTCTTCGCCGTCGCAGATCCATAGTGGT 693
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 655 AAATTTCAAGCTCCTGGCGGCGGTTCATTTCCCTCTTCTCCGTCGCAGATCCATAGTGGT 714
Query 694 GGCGGCCGTTCTCCGCCACTTCCGTTTCCTCCGGGGCAATTCACGG-GGGTAAATGCGTC 752
|| ||||||||||||||||||||| |||||||||| |||||||||| ||| |||||||||
Sbjct 715 GGTGGCCGTTCTCCGCCACTTCCGCTTCCTCCGGGTCAATTCACGGCGGG-AAATGCGTC 773
Query 753 ATTGT-CTACATCGACACCGCTTCCTCCGGGTCAATACACGGCGGTAAATGCGTCATTGT 811
||| | || |||| |||| || ||||||||||||||||| ||||| |||||||||||| |
Sbjct 774 ATT-TCCTTCATCAACACAGCCTCCTCCGGGTCAATACATGGCGGGAAATGCGTCATT-T 831
Query 812 -CTGCATCGACACCGCTTCCTCCGGGTCAATTCACGGCGGTAACA-GCGTCATTGTCTGC 869
|| |||| ||||||| |||||||||||||| || ||||| || | ||| |||| ||| |
Sbjct 832 CCTTCATCAACACCGCCTCCTCCGGGTCAATACATGGCGGGAA-ATGCGCCATTTTCTTC 890
Query 870 ATCGACACCGCTTCCTCCGGGTCAATTCACGGCGGTAAATGCGTC-ATTGTCTACAT-CG 927
|||||||||||||||||| ||||||| | ||||||| |||||| | ||||||||||| ||
Sbjct 891 ATCGACACCGCTTCCTCCAGGTCAATACCCGGCGGTGAATGCG-CAATTGTCTACATCCG 949
Query 928 ACACCGTCTGTT-CAGCTTCCTCCGGGTCAATACA-TGGCGGTAAATGCGCCATTGTCTG 985
||||||||||| || ||||||||||||||||||| | ||||| ||||||||||| || |
Sbjct 950 -CACCGTCTGTTCCA-CTTCCTCCGGGTCAATACACT-GCGGTGAATGCGCCATTTTC-G 1005
Query 986 -CATCGACACCGTCTGT-TCCGCTTCCTCCGGGCCAATACATG-GCGGTAAATGCGCCAT 1042
|||| |||| | |||| | ||||||||||||| ||||||||| |||| |||||| |||
Sbjct 1006 ACATCCACACAGCCTGTAT-CGCTTCCTCCGGGTCAATACATGCCCGGT-AATGCGGCAT 1063
Query 1043 TGTCTGCATCG--A---C--A--CCGGGTCAATTCACCACAGCAAATGCTCTACC-GCCA 1092
|||| |||||| | | | ||||||||||||||||| |||||||||| ||| | ||
Sbjct 1064 TGTCAGCATCGACACCGCTTACTCCGGGTCAATTCACCACGGCAAATGCTCCACCAG-CA 1122
Query 1093 CCGCCTGTTCCAGCAAACCAAACTTCACCACCACCACCGCCTCCGGCGTCTGCTGGGGca 1152
||||||| |||||||||||||||||||||||||||||| ||||| | ||||||| |||
Sbjct 1123 CCGCCTGGTCCAGCAAACCAAACTTCACCACCACCACCACCTCCACCATCTGCTGCGGCT 1182
Query 1153 ccacctccacctccaccgcctaaaaaaggacctgctgcgccaccaccacctcctccaccG 1212
|||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1183 CCACCTCCCCCACCACCACCTAAAAAAGGACCTGCTGCACCACCACCACCTCCTCCACCA 1242
Query 1213 GGTAAGAAAGGAGCTGGACCGCCACCACCGCCTCCAATGTCGAAGAAGGGCCCACCTAAA 1272
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1243 GGTAAGAAAGGAGCTGGACCGCCACCACCTCCTCCAATGTCGAAGAAGGGCCCACCTAAA 1302
Query 1273 CCGCCTGGTAATACTAAAGGTCCGACAAAGTCAGGTGAGACTTCATTGGATGTAGGCAAA 1332
|| ||||||||| | ||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 1303 CCCCCTGGTAATCCAAAAGGACCAACAAAGTCAGGTGAGACTTCATTGGCCGTAGGCAAA 1362
Query 1333 GCTGAGGATCCGACGCAGCCAAAGCTCAAGCCGCTACATTGGGATAAGATGAACCCTGAT 1392
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1363 ACTGAGGATCCGACGCAGCCGAAGCTCAAGCCTTTACATTGGGATAAGATGAACCCTGAT 1422
Query 1393 GCGAGTCGTTCTATGGTGTGGCACCGGATTGATGGTGGCTCCTTCAACTTTGATGGTGAT 1452
|| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1423 GCAAGCCGTTCTATGGTGTGGCACAAGATTGATGGTGGCTCCTTCAACTTTGATGGTGAT 1482
Query 1453 CTCATGGAGGCTCTGTTTGGATACGTTGCTCGAAAACCAAGTGAATCAAACAATGTACCG 1512
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1483 CTCATGGAGGCTTTGTTTGGATACGTTGCTCGAAAACCAAGTGAATCAAACAGTGTACCG 1542
Query 1513 CAGAATCCGA-ATGTCTCAAACAGTGTTCCGCAGAATCAGACTTATATCCTCGATCCTCG 1571
||||||| || | |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1543 CAGAATCAGACA-GTCTCAAACAGTGTACCGCATAATCAGACTTATATCCTTGATCCTCG 1601
Query 1572 GAAATCCCAGAACAAAGCAATTGTGCTTAAATCTTTGGGGATGACTAAGGAGGAGATCAT 1631
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1602 GAAATCTCAGAACAAAGCAATTGTGCTTAAATCTTTGGGGATGACTAAAGAAGAGATCAT 1661
Query 1632 TGACTTGTTAACAGAAGGTCATGATGCTGAGTCTGATACCCTTGAGAAGCTTGCAGGAAT 1691
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 TGACTTGTTAACAGAAGGCCATGATGCTGAGTCTGATACCCTTGAGAAGCTTGCAGGAAT 1721
Query 1692 AGCTCCAACGCCAGAAGAACAGACAGAAATCATAGATTTCGATGGTGAACCGACGACATT 1751
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1722 AGCTCCAACGCCAGAAGAACAGACAGAAATCATAGATTTCGATGGTGAACCGATGACATT 1781
Query 1752 GGCTTATGCAGACTCTCTACTGTTTCACATCTTACGAGCAGTTCCTTCTGCGTTTAACCG 1811
|||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1782 GGCTTATGCAGATTCTCTACTGTTTCACATCTTAAAAGCAGTTCCTTCCGCGTTTAACCG 1841
Query 1812 GTTCAACGTCATGCTCTTCAAGATTAACTACGGCTCTGAGGTGGTTCAACAAAAGGGATC 1871
||||||||| ||||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1842 GTTCAACGTTATGCTTTTCAAGATTAACTACGGCTCTGAGGTTGCTCAACAAAAGGGATC 1901
Query 1872 TTTACAAACACTTGAATCCGCGTGCAACGAGCTCCGTGCTCGCGGGCTATTCATGAAGCT 1931
||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1902 TTTACTAACACTTGAATCCGCGTGCAACGAGCTCCGTGCTCGTGGGCTGTTCATGAAGCT 1961
Query 1932 GCTAGAAGCAATCTTGAAAGCAGGTAATAGAATGAACGCTGGAACCGCGAGGGGAAATGC 1991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 GCTAGAAGCAATCTTGAAAGCAGGTAATAGAATGAACGCTGGAACCGCGAGGGGAAATGC 2021
Query 1992 TCAGGCTTTCAATCTGACAGCTCTAAGAAAATTGTCTGATGTGAAGAGTGTTGATGGGAA 2051
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 2022 TCAGGCTTTTAATCTGACAGCTTTAAGAAAATTGTCTGATGTGAAGAGTGTTGATGCGAA 2081
Query 2052 AACTACTTTACTTCATTTTGTTGTTGAAGAAGTTGTAAGGTCTGAGGGAAAGCGAGCTGC 2111
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2082 AACTACCTTACTTCATTTTGTTGTTGAAGAAGTTGTAAGGTCTGAAGGAAAGCGAGCTGC 2141
Query 2112 GATGAATAAGAACATGATGTCTAATGATAATGCTAGTGCCGAGAATGCAAATGTATCTAG 2171
|||||||||||||||||||||| |||||||| ||||| |||||||||| || | |||||
Sbjct 2142 AATGAATAAGAACATGATGTCTAGTGATAATGGTAGTGGCGAGAATGCAGATATGTCTAG 2201
Query 2172 AGAAGAACAAGAGATTGAATTTATTAAGCA-GGGTTTACCCATTATAGGTGGCCTAAGTT 2230
|||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||
Sbjct 2202 AGAAGAACAAGAGATTGAATTTATTAAG-ATGGGTTTACCCATTATAGGTGGCTTAAGTT 2260
Query 2231 CAGAGTTCACTAATGTGAAGAAAGCAGCTGGAATCGATTACGACTCGTTTGTAGCCACGA 2290
||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| ||||
Sbjct 2261 CAGAGTTCACTAATGTGAAGAAAGCGGCTGGAATTGATTATGATTCGTTTGTAGCTACGA 2320
Query 2291 CCTTGGCTTTAGGCACCCGAGTGAAAGAAACGAAACGCCTTTTAGACCAAAGCAAAGGGA 2350
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 2321 CCTTGGCTTTAGGCACCCGAGTGAAAGAAACAAAACGTCTTTTAGACCAAAGCAAAGGGA 2380
Query 2351 AGGAAGATGGTTGTTTGACAAAGCTGAGATCTTTCTTTGAATCTGCAGAGGAAGAACTGA 2410
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2381 AGGAAGATGGGTGTTTAACAAAGCTGAGATCTTTCTTTGAATCTGCGGAGGAAGAACTGA 2440
Query 2411 AAGTTATTACCGAGGAACAGCTCAGGATAATGGAGTTAGTGAAGAAAACCACAAATTATT 2470
|||||||||| || |||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 2441 AAGTTATTACGGAAGAACAGCTTAGGATAATGGAGTTAGTGAAGAAAACTACAAACTATT 2500
Query 2471 ACCAAGCTGGAGCCTTAAAAGAGAGGAACCTATTTCAGCTTTTTGTTATAATCCGTGATT 2530
||||||||||||| || |||||||||||||| ||||| || |||||||||||||||||||
Sbjct 2501 ACCAAGCTGGAGCATTGAAAGAGAGGAACCTGTTTCAACTGTTTGTTATAATCCGTGATT 2560
Query 2531 TCTTAGGGATGGTTGATAATGCCTGTAGTGAGATCGCAAGGAATCAACGGAaacaacaac 2590
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2561 TCTTAGGGATGGTTGATAATGCATGTAGTGAGATCGCAAGGAATCAACGGAAACAACAGC 2620
Query 2591 aacaacaacgacccgcaacaacaGTAGCAGCTGGAGCATCAAGTTCAACAGCAGAAACTC 2650
|||||| |||| |||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 2621 AACAAC---GACCTGCAACAACAGTAGCAG--G-AGCATCAAGTTCACCAGCAGAAACTC 2674
Query 2651 CGAGCGTTGCGGCTGCACCGCAAAGGAATGCGGTTAGATTTCCAATTCTACCTCCAAATT 2710
|||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 2675 CGAGCGTTGCTGCTGCACCGCAAAGGAACGCAGTTAGATTTCCAATTCTGCCTCCAAATT 2734
Query 2711 TCATGTCAGAGAGTTCAAGGTACAGTTCA-T-CAAGTGACTCAGACTCAGAATCTTGA 2766
||||||||||||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 2735 TCATGTCAGAGAGTTCAAGGTACAG--CAGTTCAAGTGACTCAGACTCAGAATCTTGA 2790
Score = 167 bits (90), Expect = 6e-40
Identities = 195/241 (81%), Gaps = 26/241 (11%)
Strand=Plus/Plus
Query 823 CCGCTTCCTCCGGGTCAATTCACGGCGGTAACA-GCGTCATTGTC-TGCATCGACACCGC 880
|||||||||||||||||||||||||||| || | |||||||| || | |||| |||| ||
Sbjct 736 CCGCTTCCTCCGGGTCAATTCACGGCGGGAA-ATGCGTCATT-TCCTTCATCAACACAGC 793
Query 881 TTCCTCCGGGTCAATTCACGGCGGTAAATGCGTCATTGTC-TACATCGACACCGTCTGTT 939
|||||||||||||| || ||||| |||||||||||| || | |||| |||||| |
Sbjct 794 CTCCTCCGGGTCAATACATGGCGGGAAATGCGTCATT-TCCTTCATCAACACCG-C---- 847
Query 940 CAGCTTCCTCCGGGTCAATACATGGCGGTAAATGCGCCATTGTCTGCATCGACACCGTCT 999
| | |||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||
Sbjct 848 C---T-CCTCCGGGTCAATACATGGCGGGAAATGCGCCATTTTCTTCATCGACACCG-CT 902
Query 1000 GTTCCGCTTCCTCCGGGCCAATACATGGCGGTAAATGCGCCATTGTCTGCATC-GACACC 1058
| || | || || | ||||| |||||| ||||||| ||||||| |||| | ||||
Sbjct 903 -T-CC--T-CCA--GGTC-AATACCCGGCGGTGAATGCGCAATTGTCTACATCCG-CACC 953
Query 1059 G 1059
|
Sbjct 954 G 954
Score = 134 bits (72), Expect = 6e-30
Identities = 151/185 (82%), Gaps = 22/185 (12%)
Strand=Plus/Plus
Query 877 CCGCTTCCTCCGGGTCAATTCACGGCGGTAAATGCGTCATTGTC-TACATCGACACCGTC 935
|||||||||||||||||||||||||||| |||||||||||| || | |||| |||| | |
Sbjct 736 CCGCTTCCTCCGGGTCAATTCACGGCGGGAAATGCGTCATT-TCCTTCATCAACACAG-C 793
Query 936 TGTTCAGCTTCCTCCGGGTCAATACATGGCGGTAAATGCGCCATTGTC-TGCATCGACAC 994
| | |||||||||||||||||||||| ||||||| |||| || | |||| ||||
Sbjct 794 ----C---T-CCTCCGGGTCAATACATGGCGGGAAATGCGTCATT-TCCTTCATCAACAC 844
Query 995 CGTCTGTTCCGCTTCCTCCGGGCCAATACATGGCGGTAAATGCGCCATTGTCTGCATCGA 1054
|| | | | |||||||| ||||||||||||| |||||||||||| ||| ||||||
Sbjct 845 CG-C----C---T-CCTCCGGGTCAATACATGGCGGGAAATGCGCCATTTTCTTCATCGA 895
Query 1055 CACCG 1059
|||||
Sbjct 896 CACCG 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137407256877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5