BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907505
Length=2703
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59780.1 | Symbols: | NB-ARC domain-containing disease resi... 3097 0.0
> AT1G59780.1 | Symbols: | NB-ARC domain-containing disease resistance
protein | chr1:21993581-21997691 REVERSE LENGTH=2721
Length=2721
Score = 3097 bits (1677), Expect = 0.0
Identities = 2392/2728 (88%), Gaps = 85/2728 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGACGCAATTGTATCGTTCGGTGTTGGAAAGCTCTGGGAACTCGTGAGCGAAGAT 60
|||| ||| ||||||||||||||||||||| |||||| ||| ||||| ||||| ||||
Sbjct 16 ATGGTTGATTCAATTGTATCGTTCGGTGTTGAAAAGCTTTGGAAACTCCTGAGCCAAGAA 75
Query 61 TATCAGCGATTTCGGGGAGTTGAAGAGCAAATTACTCAGCTAAAGAG-TGATCTGAAGAT 119
||| ||||||| | ||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct 76 TATGAGCGATTCCAGGGAGTTGAAGAGCAAATTACGGAGCT-AAGAGATGATCTGAAGAT 134
Query 120 GTTAATGTCCTTTCTGA-GTGACGCGGATGCAAGGAAACAAACAAC-TGCACTTGCAAGA 177
||||||| ||||||| | ||| || ||||||| ||||||||| | |||||||||||||
Sbjct 135 GTTAATGGCCTTTCT-ATCTGATGCAGATGCAAAGAAACAAAC-CCGTGCACTTGCAAGA 192
Query 178 AACTGCGTAGACGACG-TAAAGGAAATCACTTACGATGCCCAGGATATAATTGAAACATA 236
|||||| | || || | |||||||||||||||| ||||| |||||||||| | || ||
Sbjct 193 AACTGCCTTGAAGA-GATAAAGGAAATCACTTATGATGCTGAGGATATAATAG-AA-ATC 249
Query 237 TCTTCTAAAGCGAGAACGAAGTGAAAGTAGTGGCATCAAGAAACACATGAGAAGTCTTGC 296
| |||| | || || | | ||| | || | |||||||||| |||||
Sbjct 250 T-TTCT---TC--TAA--AA--G---GCAGT-G--TC-----A-ACATGAGAAGCCTTGC 287
Query 297 TTGCATTCAAAGTGGTCGTAGGAAGACTGCCTTAG-AAATCACAAGCATTAGTAAGAGAA 355
|||| ||| | ||||||||||| ||| |||||| | ||||||||||||| |||||||| |
Sbjct 288 TTGCTTTCCAGGTGGTCGTAGGGAGATTGCCTT-GCAAATCACAAGCATCAGTAAGAGGA 346
Query 356 TCTCCAAAGTGATCCAGGTTATGCGAG-ATTTTGGGATACAATCGA-ACATTATTGAAGG 413
||||||| || ||||| ||||||| || |||| || ||| |||| | ||||||| || ||
Sbjct 347 TCTCCAAGGTTATCCAAGTTATGC-AGAATTTAGGCATAAAATC-AGACATTATGGACGG 404
Query 414 TG-GGTATTCGCAGGCTCTACAT-GATAGAAAAAGGGAAATGCGTCATACATTTTCCAAT 471
|| || ||||||| |||| || | || || |||||||| |||||||||||||||| | |
Sbjct 405 TGTGG-ATTCGCATGCTCAAC-TGGAAAGGAAAAGGGAGTTGCGTCATACATTTTCTAGT 462
Query 472 GAGTCTGAAAGCAATCTTGTTGGTTTGGAGAAAAATGTTGAGAGATTGGTT-AAGGAATT 530
|| ||||| |||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct 463 GAATCTGAGAGCAATCTTGTTGGTTTGGAGAAAAATGTTGAGAAATTGGTTGAA-GAATT 521
Query 531 GGTGGGAAATGATGATAGCAGTCACGGGGTATCTATAACTGGCTTGGGTGGTCTTGGCAA 590
|||||| || | ||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 522 GGTGGG-AA--ACGATAGCAGTCATGGGGTATCTATTACTGGTTTGGGTGGTCTTGGCAA 578
Query 591 AACCACCCTTGCCCGGCAAGTTTTTAATCATGATACA-GTAAAACGTCATTTTGATGGAC 649
|||||||||||| |||||| ||||| ||||||||| | |||||| |||||||||||||||
Sbjct 579 AACCACCCTTGCACGGCAAATTTTTGATCATGATA-AGGTAAAAAGTCATTTTGATGGAC 637
Query 650 TTGTGTGGGTGTGTGTATCGCAAGAGTTTACACGGAAGGATGTGTGGCAGACCATCTTGA 709
||| ||||||||||||||| ||||||||||||||||| ||||||||| | |||||||||
Sbjct 638 TTGCGTGGGTGTGTGTATCACAAGAGTTTACACGGAAAGATGTGTGGAAAACCATCTTG- 696
Query 710 GGG-ATCTTAGTCCTGGAGATAAAGATTCAAACTTGCGGGAAGACGATATTCAGAAGAAA 768
||| ||||||||||| | ||||||| ||| |||||| ||||||||||||||||||||||
Sbjct 697 GGGAATCTTAGTCCTAAATATAAAGACTCAGACTTGCCGGAAGACGATATTCAGAAGAAA 756
Query 769 CTCGTTCAGTTGTTGGAAACaaaaaaaGCTTTGATCGTCTTTGATGACCTATGGAAAAAA 828
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 757 CTCTTTCAGTTGTTGGAAACAAAAAAAGCTTTGATCGTCTTTGATGACCTATGGAAAAGA 816
Query 829 GAAGACTGGGACAGAATAAAGCCAATGTTTCCAGAGAGAAAAGCTGGTTGGAAGGTACTA 888
|| |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 817 GAGGACTGGTACAGAATAGCGCCCATGTTTCCAGAGAGAAAAGCTGGTTGGAAGGTACTA 876
Query 889 CTTACTTCACGCAACGACGCAATACATCCACATTGTGTGACCTTCAAACCAGAACTCCTA 948
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 877 CTTACTTCACGCAACGATGCAATACATCCACATTGTGTGACTTTCAAACCAGAACTCTTA 936
Query 949 ACTCATGACGAATGTTGGAAACTTTTACAAATGATAGCATTTCCTAAG--AACGTC-ACA 1005
||||||||||||||||||||||||||||||| |||||||||| ||||| || | | |
Sbjct 937 ACTCATGACGAATGTTGGAAACTTTTACAAAGGATAGCATTTTCTAAGCAAAAAACAATA 996
Query 1006 ACTGGATATATAATTGATAAAGATATGGTAGAGATGGCTAAGCAGATGATC-AAACATTG 1064
||||||||||||||||||||||| |||||| ||||||||||| |||||| | ||||||||
Sbjct 997 ACTGGATATATAATTGATAAAGAAATGGTAAAGATGGCTAAGGAGATGA-CAAAACATTG 1055
Query 1065 TGGAGGACTACCATTGGCTGTCAAAGTGTTAGGAGGGTTGTTAGCTGCCCAACACACACC 1124
| | |||||||||||||||||||| ||||||| ||||| |||| |||| ||||||||
Sbjct 1056 TAAAAGACTACCATTGGCTGTCAAACTGTTAGGCGGGTTATTAGATGCCAAACACACATT 1115
Query 1125 ACGTCAGTGGAAAATGATATCTGAGAATATTAAATCTCACATAGTTGGAGGTGGGATTAG 1184
|||||||||||| |||||||||||||||||| |||||||||||||| || |||| |||
Sbjct 1116 GCGTCAGTGGAAACTGATATCTGAGAATATTATATCTCACATAGTTGTTGGAGGGACTAG 1175
Query 1185 TTCCAATGATGACGATAGCAGTTCGATCAATCATGTTCTGTCTTTGAGCTTTGAAGGATT 1244
||||||||| |||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1176 TTCCAATGAAAACGATAGCAGTTCGGTTAACCATGTTCTGTCTTTGAGCTTTGAAGGATT 1235
Query 1245 GCCTAGTTATTTGAAGCACTGCTTACTCTACCTAGCCTCTTTTCCAGAAGATCGTCAAAT 1304
|||| |||||||||||||||||||||||||||||||||||| ||| ||||||| | ||||
Sbjct 1236 GCCTGGTTATTTGAAGCACTGCTTACTCTACCTAGCCTCTTATCCCGAAGATCATGAAAT 1295
Query 1305 AGAATTAGAGAGATTGTCTTATGTCTGGGCTGCAGAAGGTATAACAAATCCTAGGCATTA 1364
||| |||||||||||||||||||||||||||||||||| |||||| ||||| || ||||
Sbjct 1296 CGAAATAGAGAGATTGTCTTATGTCTGGGCTGCAGAAGGAATAACATATCCTGGGAATTA 1355
Query 1365 CGAGGGAGCTTCCATTCGAGATGTTGCGGATCTCTACATAGAAGAGTTAGTGAAGAGAAA 1424
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 CGAGGGAGCTACCATTCGAGATGTTGCGGATCTCTACATAGAAGAGTTAGTGAAGAGAAA 1415
Query 1425 TCTGGTTATTTCTC-AAAGAGACTTGGCGACTTCGAGATTTGAAATTTGTCAGTTGCATG 1483
| |||||||||| | |||||||| | ||||||||||||||||| |||||||||||||
Sbjct 1416 TATGGTTATTTC-CGAAAGAGACGCGTTGACTTCGAGATTTGAAAAATGTCAGTTGCATG 1474
Query 1484 ACTTGATGAGAGAGATTTGTTTGTTAAAAGCCAAGGAAGAGAGCTTTGTAAAGATTGTTA 1543
|||||||||| ||||||||||||||||||||||||||||||| |||| || |||||||||
Sbjct 1475 ACTTGATGAGGGAGATTTGTTTGTTAAAAGCCAAGGAAGAGAACTTTTTACAGATTGTTA 1534
Query 1544 GTGATCCAGCCAGCAGCTCAAGCGTACACTCTCAAGCTTCTAGCAAATCACGTAGACTCG 1603
||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1535 CTGATCCAACCAGCAGCTCAAGCGTACACTCTCTAGCTTCTAGCAGATCACGTAGACTCG 1594
Query 1604 TTGTGTACGGCACCCGTACTTTTAGTGGAGAGAGGGAGATGAAGAATTCCAAACTTAGAT 1663
| |||||| |||| ||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 1595 TAGTGTACAACACCAGTATTTTTAGTGGAGAGAACGATATGAAGAATTCCAAACTTAGAT 1654
Query 1664 CTCTCTTGTTTATTCCAGTTGGGTATGA-TTGGTTTAT-GATGAGATCAAACTTCATGGA 1721
|||||||||||||||||||||||||| | | ||||| | |||| ||||||||||||| ||
Sbjct 1655 CTCTCTTGTTTATTCCAGTTGGGTAT-AGTAGGTTT-TCGATGGGATCAAACTTCATAGA 1712
Query 1722 GTTACCATTGTTGAGGGTTTTAGATCTCAGATGG-GCTAAATTTGAGGGAGGGAAGTTAC 1780
|||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||
Sbjct 1713 GTTACCATTGTTGAGGGTTTTAGATCTC-GATGGAGCTAAATTTAAAGGAGGGAAGTTAC 1771
Query 1781 CCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGAGTTTATATGACGCAAAGGTAA 1840
||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||
Sbjct 1772 CCTCTAGCATTGGAAAGCTCATCCACTTGAAGTATTTGAGTTTATATCAGGCATCTGTAA 1831
Query 1841 CTCATCTACCTTCATCTTTGCGGAACCTGAAGTCGCTGCTCTATCTTAATCTAAATATAC 1900
|| || |||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1832 CTTATTTACCTTCATCTTTGCGGAACCTGAAGTCGCTGCTCTATCTCAATCTACGTATAA 1891
Query 1901 GTTC---TCATCTGAATGACGTGCCCAATGTCTTTAAAGAGATGCTAGAACTGAGATATC 1957
||| ||| |||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1892 ATTCTGGTCAGCTGATTAACGTGCCCAATGTCTTTAAAGAGATGCTAGAACTGAGATACC 1951
Query 1958 TCTGCTTACCAT-GGAGTACAACTAGTAGGACAAAGTTGGAATTGGGTAATCTACTCAAA 2016
|| ||||||||| ||| | || |||| ||||||||||||| |||||||||||||||||
Sbjct 1952 TCAGCTTACCATGGGA-AAGAAGTAGTTTGACAAAGTTGGAACTGGGTAATCTACTCAAA 2010
Query 2017 TTGGAGACGTTGA-AGTATTTCTCAACAGAGAATAGCAATGCGACGGATCTTCACCGTAT 2075
||||||||||||| | ||||||||||| || |||||| || ||| ||||||||||||||
Sbjct 2011 TTGGAGACGTTGATA-AATTTCTCAACAAAGGATAGCAGTGTGACAGATCTTCACCGTAT 2069
Query 2076 GACAAGGCTAAGGAGTCTCGATATCTTAATCAGTGGCGAGGGGTGGCGTATGGAAACTCT 2135
||||| |||||||| ||| | |||||||||||||||||||||| || ||||||||||||
Sbjct 2070 GACAAAGCTAAGGACCCTCCAAATCTTAATCAGTGGCGAGGGGTTGCATATGGAAACTCT 2129
Query 2136 ATCTTCAACTCTAAGTAAATTGGGACACTTGGAAGATCTTACTA-T-ACGATCTCCCGAG 2193
|||||| ||||||||| ||||||||||||||||||||||| | | || | || |||||
Sbjct 2130 GTCTTCAGCTCTAAGTATGTTGGGACACTTGGAAGATCTTAC-AGTAAC-ACCTTCCGAG 2187
Query 2194 AATTCCGTTCA-TCTCAAACACCCTAAGTTGATATATAGGCCGATGTTACCTGATGTGCA 2252
||||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2188 AATTCCGTTCAGT-TCAAGCACCCGAAGTTGATATATAGGCCGATGTTACCTGATGTGCA 2246
Query 2253 ACATTTTCCTTCTCATCTTACAACCATATCTCTAGAAGATTGTCGTTTGGAGGAGGATCC 2312
||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 2247 ACATTTTCCTTCTCATCTTACAACCATATCTCTAGTATATTGTTTTTTGGAGGAGGATCC 2306
Query 2313 GATGCCAATTTTAGAGAAACTGCTACAACTGAAAGTGGTTTCTTTATGGTGGAACGCTTA 2372
|||||||| | ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 2307 GATGCCAACTCTAGAGAAACTGCTACAACTGAAAGTGGTTTCTTTATGGTACAACGCCTA 2366
Query 2373 TGTTGGGAGG-GAAATGGTTTGCTCCAGCGGTGGGTTTCCTCAATTGCTGAAGCTCGATT 2431
|||||||||| ||| |||||||| || ||||||||||||||| ||||| | ||| ||
Sbjct 2367 TGTTGGGAGGAGAA-TGGTTTGCACCGGCGGTGGGTTTCCTCCATTGCACAGGCTTGAAA 2425
Query 2432 TGTGTGGACTAGATGAATGGGAAGAGTGGAAAGTAGAAGAAGGCTCCATGCCCCTTCTTC 2491
| || |||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 2426 TATGGGGACTAGATGCCTTGGAAGAGTGGATAGTAGAAGAAGGCTCCATGCCCCTTCTTC 2485
Query 2492 ATTCTCT-CATTATTCATTGG-TGTC-GTAAGCTAAAGGAGCTTCCAGATGGGCTGAGAT 2548
|| |||| ||| ||| | | ||| | || |||||||| |||||||||||||| |||
Sbjct 2486 ATACTCTGCAT-ATTG-TAGACTGTAAGAAAT-TAAAGGAGATTCCAGATGGGCTGCGAT 2542
Query 2549 TTATCACTTCATTACAGGAATTGGGTATCTACACAAAGGAAAGAGAATTTCAGAAGAGGG 2608
|||||| ||||||| ||||||||| |||| |||||| |||| || ||||||||||| ||
Sbjct 2543 TTATCAGTTCATTAAAGGAATTGGCTATCCGCACAAATGAAAAAGTATTTCAGAAGAAGG 2602
Query 2609 TTTCCAAAGGAGGAGAAGATTACTATAAAATCCAACACATTCCTCTTATTCGATATGACT 2668
| ||||||||||||||||||||||||||||| |||||| | ||||||||||||||| |||
Sbjct 2603 TATCCAAAGGAGGAGAAGATTACTATAAAATGCAACACGTCCCTCTTATTCGATATAACT 2662
Query 2669 GGCCACAAAAACCAGAAGACAACGAGGT 2696
|||||||| |||||||| ||||||||||
Sbjct 2663 GGCCACAAGAACCAGAAAACAACGAGGT 2690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134246739468
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5