BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907510
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32810.1 | Symbols: BGAL9 | beta galactosidase 9 | chr2:1391... 302 1e-81
> AT2G32810.1 | Symbols: BGAL9 | beta galactosidase 9 | chr2:13919127-13925350
REVERSE LENGTH=2972
Length=2972
Score = 302 bits (163), Expect = 1e-81
Identities = 198/214 (93%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 10 AGTAATCTACTTGTGCTCTTTGAAGAGACTGGTGGAAACTCATTTGATATATCGGTTAAG 69
|||||||||||||||||||||||||||||||| |||||| ||||| | ||||||||||||
Sbjct 2234 AGTAATCTACTTGTGCTCTTTGAAGAGACTGGGGGAAACCCATTTAAGATATCGGTTAAG 2293
Query 70 ACAGTTACTGCTGGGATTCTGTGCGGTCAAGTCTCGGAATCACATT--CCACATCTGCGG 127
||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||
Sbjct 2294 ACAGTTACTGCTGGGATTCTGTGCGGTCAAGTCTCGGAATCGCATTATCCACCTCTGCGG 2353
Query 128 AAATGGTCCACACCAGATTACATAAACGGAACGATGTC-A-A--CAGTGTGGCACCAGAA 183
|||||||||||||||||||||||||||||||| ||||| | | ||||||||||||||||
Sbjct 2354 AAATGGTCCACACCAGATTACATAAACGGAACAATGTCGATAAACAGTGTGGCACCAGAA 2413
Query 184 GTGCATTTGCATTGTGAAGATGGGCATGTAATAT 217
|||||| |||||||||||||||| ||||| ||||
Sbjct 2414 GTGCATCTGCATTGTGAAGATGGACATGTCATAT 2447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10405424043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5