BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907512
Length=285
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32800.1 | Symbols: AP4.3A | protein kinase family protein |... 340 3e-93
> AT2G32800.1 | Symbols: AP4.3A | protein kinase family protein
| chr2:13916452-13919179 FORWARD LENGTH=2728
Length=2728
Score = 340 bits (184), Expect = 3e-93
Identities = 245/273 (90%), Gaps = 9/273 (3%)
Strand=Plus/Plus
Query 17 GTTGCCACC-CTAAAACAGATGTTTTCAGCTTTGGTGTTGTGGTTTTTGAGATTG-CTTC 74
||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| || |
Sbjct 990 GTTGCCACCGCTAAAACAGATGTTTTCAGCTTTGGTGTTGTGGTTTTAGAGGTTGTCTCC 1049
Query 75 GGGTAGAC-ATGCCGTTGATCTTTTC-TTCTCTGAAGATAAAATCATTTTGCTTGATTGG 132
|| ||||| | ||||||||||||| | ||||| ||||||||||||||||| |||||||||
Sbjct 1050 GG-TAGACGA-GCCGTTGATCTTT-CGTTCTCGGAAGATAAAATCATTTTACTTGATTGG 1106
Query 133 GTTCGGAGATTATCTGATAACCGGAAATTACTCGACGCTGGAGATTCTCGGTTA-CTAAA 191
|||||||||||||| ||||||||||||||||||||||| || |||||||||||| | |||
Sbjct 1107 GTTCGGAGATTATCCGATAACCGGAAATTACTCGACGCCGGGGATTCTCGGTTAGC-AAA 1165
Query 192 AGGATCTTATGATAACTCCGATATGAAGAGATTGATTCATCTTGCTCTACTTTATTCGTT 251
||||||||||||| ||| |||||||||||| |||||||||||||||| || | ||| ||
Sbjct 1166 AGGATCTTATGATCTCTCTGATATGAAGAGAATGATTCATCTTGCTCTGCTCTGTTCTTT 1225
Query 252 AAACAACCCAATACATCGTCCCAACATGAAATG 284
|||||| |||| ||||||||||||||||||||
Sbjct 1226 AAACAATCCAACGCATCGTCCCAACATGAAATG 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13119882489
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5