BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907514
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59725.1 | Symbols: | DNAJ heat shock family protein | chr1... 1552 0.0
> AT1G59725.1 | Symbols: | DNAJ heat shock family protein | chr1:21950738-21952210
FORWARD LENGTH=996
Length=996
Score = 1552 bits (840), Expect = 0.0
Identities = 945/995 (95%), Gaps = 10/995 (1%)
Strand=Plus/Plus
Query 1 ATGGGGGTTGATTACTACAATGTACTCAACGTGAATCCAACCGCAACCGAAGACGATCTA 60
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1 ATGGGGGTTGATTACTACAATGTACTCAACGTGAATCCAAGCGCAACGGAAGACGATCTA 60
Query 61 AAGAAATCGTATCGAAGACTTGCGATGAAATGGCACCCTGACAAAAACCC-AGCTTCAAA 119
||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 61 AAGAAATCGTATCGAAGACTTGCAATGAAATGGCACCCTGACAAAAACCCTA-CTTCAAT 119
Query 120 CAAGAAAGAAGCTGAAGCTAAGTTCAAACAAATCTCCGAAGCTTACGATGTTTTAAGCGA 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAAGCAAGAAGCTGAAGCTAAGTTCAAACAAATCTCCGAAGCTTACGATGTTTTAAGCGA 179
Query 180 TCCTAATAAACGTCAGATCTATGATCAATACGGTGAAGACGGACTTACGGCGACAG-A-- 236
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 180 TCCTAACAAACGTCAGATCTATGATCAATATGGTGAAGACGGACTTACGGCGACAGAAGC 239
Query 237 AACGGCGTCGTCTCAACAACAGAATCACTCTTCTGGTAACAACAAT-A--ACAATGC-GG 292
||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||| ||
Sbjct 240 AACGGCGTCGTCTCAACAACATAATTACTCTTCTGGTAACAACAATAATTACAATGCAGG 299
Query 293 GATTTAGGTATTATCCACGTGATGCTGAAGATATTTTTGCTGAGTTTTTCGGTGCATCTG 352
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 G-TTTAGGTATTATCCACGTGATGCTGAAGATATTTTCGCTGAGTTTTTCGGTGCATCTG 358
Query 353 AGAAAGTCTTTGGTGGTGGTGGCGGCGGTGGCGGGAGATTTAAAACTGCGGAGGCGGGAA 412
|||||||||||| |||||| | ||||||||||||||| ||||||| ||||||||||||||
Sbjct 359 AGAAAGTCTTTGATGGTGGCGTCGGCGGTGGCGGGAGGTTTAAAAGTGCGGAGGCGGGAA 418
Query 413 GTCAGACGAATAGGAAAACACCGGTGAATAGGAAAGCTCCGGCGATTGAAAGTAAATTGG 472
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 419 GTCAGACGAATAGGAAAACTCCGGTGAACAGGAAAGCTCCGGCGATTGAGAGTAAATTGG 478
Query 473 CTTGTACTCTTGAGGAGTTGTATAAAGGTGGGAGGAGGAAGATGAAGATTTCCCGAGTTG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 CTTGTACTCTTGAGGAGTTGTATAAAGGTGGGAGGAGGAAGATGAAGATTTCCCGCGTTG 538
Query 533 TTCCTGATGGTCTTGGAAAGACAAAACCAGTGGAAGAGATCTTGAAGATAGACATAACAC 592
|||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||
Sbjct 539 TTCCTGATGGTCTTGGAAAGTCAAAGCCAGTGGAAGAGATCTTGAAGATAGATATAACAC 598
Query 593 CAGGATGGAAGAAAGGAACAAAGATAACTTTTCCAGAGAAAGGAAACCAAGAACCCGGTG 652
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CAGGATGGAAGAAAGGAACTAAGATAACTTTTCCAGAGAAAGGAAACCAAGAACCCGGTG 658
Query 653 TTACTCCCGCGGATCTCATCTTTGTTATCGATGAGAAACCGCATTCGGTTTACAAAAGAG 712
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 TTACTCCCGCAGATCTCATCTTTGTTATAGATGAGAAACCGCATTCGGTTTACAAAAGAG 718
Query 713 ACGGTAACGATCTGATTGTAGACAAGAAAGTTTCACTGTTGGAGGCTTTAACAGGGATCA 772
||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 719 ACGGTAACGATCTTATTGTAGACAAGAAAGTTTCGCTTTTGGAGGCTTTAACAGGGATCA 778
Query 773 CTCTTAGCTTAACAACTTTAGACGGGAGGAATCTGACTATCCCGGTATTGGATATTGTTA 832
|||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 779 CTCTTAGCTTAACAACACTAGACGGGAGGAATCTGACTATCCCGGTTTTGGATATCGTTA 838
Query 833 AACCGGGGCAGGAGATAGTAATTCCTAATGAAGGAATGCCCGTTTCTAAAGAAGTTTCAA 892
||||||| ||||||||||| ||||||| ||||||||||||| | |||||||||| |||||
Sbjct 839 AACCGGGTCAGGAGATAGTGATTCCTAGTGAAGGAATGCCCATCTCTAAAGAAGGTTCAA 898
Query 893 AGAGAGGAGATCTAAGAATCAACTTTGAGATTTGTTTCCCCTCGAGGCTAACATCAGAAC 952
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 899 AGAGAGGAGATCTAAGAATCAACTTTGAGATATGTTTCCCCTCGAGGCTAACATCGGAAC 958
Query 953 AGAAGACAGATCTCAAGAGAGTTCTTGGTGGTAGC 987
|||||||||||||||||||||||||||||||||||
Sbjct 959 AGAAGACAGATCTCAAGAGAGTTCTTGGTGGTAGC 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5