BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907515
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59722.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 418 4e-116
> AT1G59722.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:21944689-21945221 REVERSE LENGTH=471
Length=471
Score = 418 bits (226), Expect = 4e-116
Identities = 355/413 (86%), Gaps = 25/413 (6%)
Strand=Plus/Plus
Query 406 CTT-AAGAAGCCCAAGCCAAAAGAAACGGAAGA-GAATGATCATCTTAGGGTTTCAGACA 463
||| |||||||||||||| |||||||||||||| | |||||||||||||| |||||||||
Sbjct 12 CTTGAAGAAGCCCAAGCCGAAAGAAACGGAAGATG-ATGATCATCTTAGGATTTCAGACA 70
Query 464 ACAGCGCCATCATCTCAAACCGCAAAGTTGGGTTATGCCTTCCGTGGCTCCCACGAAAGT 523
||| | ||| ||||||||||||| ||| | |||| | | | | | | |||| |
Sbjct 71 ACAACACCACCATCTCAAACCGC-AAGAT-GGTT-T--C-AAC-T-G-----AAGAAACT 117
Query 524 G-TTCCAATTTGGAATCTTCTGCTACTTCCAAGGTTTCTAAGGATGTTGTTATTCCGGAT 582
| |||||||| || ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 118 GCTTCCAATTGGGGATCTTCTGCTACTTCCAAGGTTTCTAAGGATGTTGC-AG-CCGGAT 175
Query 583 TCTTCTCGCCTTGATCCTTTCACGTTAGGTTTTTCCGGCAG-CGAATACTTCCCCGCGGA 641
| ||||| | | ||||||||||||||||| ||||||| || ||| |||||||| || ||
Sbjct 176 T-TTCTCTCATGGATCCTTTCACGTTAGGGTTTTCCGT-AGGCGATTACTTCCCAGCTGA 233
Query 642 TCCAATGGAGATCACAGATAATTGGGGGGTCTGCGCCAACAGTGGTGTTTGGGATCCTTC 701
|||||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 234 TCCAATGGAGGTCACATATAATTGGGGGGTCTGTGCCAACAATGGTGTTTGGGATCCTTC 293
Query 702 TTGGCTAGATTTTGATTGTTCCTCAACACTATTTACTGATGATTGGACTGTTTCTGGCTA 761
||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 294 TTGGCTAGATTTTGATTTTTCATCAACACTATTTACTAATGATTGGACTGTTTCTGGCTA 353
Query 762 CA-CTCCACTTTTGCGAGCCACTGATTCTTTTACCGCGAGCA-TTTACAAACG 812
|| | ||||||||| |||||||||||| ||||| |||||||| ||| ||||||
Sbjct 354 CAAC-CCACTTTTGGGAGCCACTGATTTTTTTAACGCGAGCACTTTCCAAACG 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5