BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907520

Length=957
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination e...   523    1e-147
  AT1G54550.1 | Symbols:  | F-box and associated interaction doma...  62.1    1e-08 
  AT3G20690.1 | Symbols:  | F-box and associated interaction doma...  56.5    5e-07 


> AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination 
effector family protein | chr1:21933021-21934216 FORWARD LENGTH=795
Length=795

 Score =  523 bits (283),  Expect = 1e-147
 Identities = 404/459 (88%), Gaps = 22/459 (5%)
 Strand=Plus/Plus

Query  455  CAGAGAA-ATTTGGACCGCATCTTCCTCTGCCGTTTCACTCTTATGATAATGAGGATGGG  513
            |||| || ||||||||||||||||||||||||| ||||||||||||   ||   ||    
Sbjct  350  CAGA-AAGATTTGGACCGCATCTTCCTCTGCCGGTTCACTCTTATG---AT---GA----  398

Query  514  GCTGTGACTCTATCTTGTGTCAGACAAGAGCAACTTGCTTTGTTATATCAGAACAGCGAG  573
             | ||||||||||||||||||||||||||||| |||||||||||||||  ||||| ||||
Sbjct  399  -C-GTGACTCTATCTTGTGTCAGACAAGAGCAGCTTGCTTTGTTATATGGGAACAACGAG  456

Query  574  ACAGTTGAGTCATTAGAGATTTGGATTACGAATCAGATTGATCCCAATGCGGTGTCGTGG  633
            |||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  457  ACAGATGATTCATTAGAGATTTGGATTACAAATCAGATTGATCCCAATGCAGTGTCGTGG  516

Query  634  AGCATATTTTTGAAAGTGGATATCGAACCGCTTATTGGTTTTCCAAAAAACTTTGAACCT  693
            |||||||||||||||||||||||| ||||||||||||||||||||||| |||| || |||
Sbjct  517  AGCATATTTTTGAAAGTGGATATCAAACCGCTTATTGGTTTTCCAAAAGACTTCGATCCT  576

Query  694  GCGAGCTTCTTCATTGACGAAGAGAAGAAAGTCGCTGTGGTTTCCGAA--G-ACGAATAT  750
            | |||||||||||||||||||||||||||||||| |||||||| |||   | ||| | ||
Sbjct  577  GGGAGCTTCTTCATTGACGAAGAGAAGAAAGTCGTTGTGGTTTACGATTTGGACGGACAT  636

Query  751  TTATATTTTACCAATGA-GACCTGTCGC-TACCAAACACTTTACATCATTGGAGAAGATG  808
            ||||||  |||||| || || |||| || |||||||  ||||||||||||||||||||||
Sbjct  637  TTATATAGTACCAA-GAAGAACTGT-GCCTACCAAAGGCTTTACATCATTGGAGAAGATG  694

Query  809  GATACTTCAAATCTTTCAAAATTAGATGCTCTGACTCACCTGAATTCTCTTCTTATGCTC  868
            ||||||||| |||| | ||||| | ||||||||||||||||||||||||| |||||||||
Sbjct  695  GATACTTCACATCTGTAAAAATCAAATGCTCTGACTCACCTGAATTCTCTGCTTATGCTC  754

Query  869  CCAGTTTAGTGCACATAcaaaccaaccaacaaggcaaaa  907
            | ||||||||| |||||||||||||||||| | ||||||
Sbjct  755  CAAGTTTAGTG-ACATACAAACCAACCAACTACGCAAAA  792


 Score =  252 bits (136),  Expect = 5e-66
 Identities = 155/164 (95%), Gaps = 2/164 (1%)
 Strand=Plus/Plus

Query  10   ATGTCAGATCTTGCTGTGGATTTGATAGGGGAGATACTCTCTAGGGTTCCGCTAACATCT  69
            |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCAGATCTTTCTGTGGATTTGGTAGGGGAGATACTCTCTAGGGTTCCGCTAACATCT  60

Query  70   CTGAGCGCAGTACGATGTACTTGCAAATCGTGGAA-AGCTTTATCTAAGCATCAGATTGT  128
            ||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct  61   CTGAGCGCAGTGCGATGTACTTGCAAATCGTGGAACA-CTTTATCTAAGCATCAGATTTT  119

Query  129  TGGTAAAGCAGAAGTAGCAGCAACAAAGCAGTTTTTGGGGTTCA  172
            ||||||||||||| ||||||| || |||||||||||||||||||
Sbjct  120  TGGTAAAGCAGAATTAGCAGCGACTAAGCAGTTTTTGGGGTTCA  163


> AT1G54550.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:20369651-20370986 FORWARD LENGTH=1336
Length=1336

 Score = 62.1 bits (33),  Expect = 1e-08
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand=Plus/Plus

Query  347  GCGTGTCTTTGAAGGGAAATACTTACTTTTTTG  379
            |||||||||||||||||||||||||||||||||
Sbjct  625  GCGTGTCTTTGAAGGGAAATACTTACTTTTTTG  657


> AT3G20690.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:7231570-7232682 REVERSE LENGTH=1113
Length=1113

 Score = 56.5 bits (30),  Expect = 5e-07
 Identities = 38/42 (90%), Gaps = 0/42 (0%)
 Strand=Plus/Plus

Query  346  GGCGTGTCTTTGAAGGGAAATACTTACTTTTTTGCTCAAGAT  387
            ||||||||||||||||||||||||||||  | |||| |||||
Sbjct  610  GGCGTGTCTTTGAAGGGAAATACTTACTGGTATGCTAAAGAT  651



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46818225004


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5