BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg907534 Length=1092 Score E Sequences producing significant alignments: (Bits) Value AT1G58090.1 | Symbols: | F-box and associated interaction doma... 987 0.0 AT1G59630.1 | Symbols: | F-box associated ubiquitination effec... 664 0.0 AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-... 263 3e-69 > AT1G58090.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:21510510-21511625 FORWARD LENGTH=1116 Length=1116 Score = 987 bits (534), Expect = 0.0 Identities = 939/1125 (83%), Gaps = 65/1125 (6%) Strand=Plus/Plus Query 17 CGAGAAAGCTTCCATCAGAGCTAGAAGAGGAGATACTCTTCCGAGTGCCACCTCGATCTC 76 ||| ||||||||||| ||| || ||||| ||||||||||| ||||| ||||||||||||| Sbjct 8 CGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCTCGATCTC 67 Query 77 TCGTTCGCTTCAGATCCGTTTGCAAAGAGTGGAACACTCTTTTCCACAATAAGAGATTCA 136 |||||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||| Sbjct 68 TCGTTCGCTTCAGATCCGTTTGCAGAGAATGGAACACTCTTTTCAAGAATAAGAGATTCA 127 Query 137 TCAACAAAAACTTTGCTTGCAATCGCCCAGAATTCGTGTTAACGACACATTCCCATATTT 196 |||||||||||||||||||| ||| |||||| || |||||| |||||||| ||||||| Sbjct 128 TCAACAAAAACTTTGCTTGCGGTCGGCCAGAAATCATGTTAAATACACATTCACATATTT 187 Query 197 ATTCGATAAGCGTCAATCTCAATGACG---ATCCAACTATGAAA-GTGCACGATTTATGC 252 |||||||||||||| ||||||| |||| |||||||||| ||| |||| |||||| || Sbjct 188 ATTCGATAAGCGTCGATCTCAAAGACGAAAATCCAACTAT-AAAGGTGCGTGATTTACGC 246 Query 253 GTTG---ATTTACA-CCGTCTCCGTTATTC-TCTCTATGGGACT-TGCGATGGTAACTTA 306 ||| ||||| | | | | |||| || ||| ||||||| | |||||||||||| Sbjct 247 TTTGATCATTTA-AGTTGCCGCGGTTA-TCATCTGTATGGGA-TCTGCGATGGTAAC--- 300 Query 307 TTCTTCATGTAT-G-ATTCTT-A--CA-AAAGAGGCGTGGTTTGGAACCCGTTG--TT-G 357 |||||||||||| | ||||| | | ||||||| ||||||||||||||| || | Sbjct 301 TTCTTCATGTATAGCTTTCTTAATGGAGGCGGAGGCGTTGTTTGGAACCCGTTGTTTTGG 360 Query 358 AGAAAGACTAAATTGATTGCCAAGGATGAGAATATATGTGGC-AGGAGCATGGGTTACGA 416 ||| ||||||||| ||||||||||| |||||||| ||||||| ||| ||| |||||||| Sbjct 361 AGACAGACTAAATGGATTGCCAAGGCTGAGAATACATGTGGCAAGG-CCATTGGTTACGA 419 Query 417 TGGTAGTAGACCCGAAAAGAGTTACAAGATTATTGGACGTTGCAGTACTAATT-----GG 471 ||||||||||||||||||||||||||||||||| ||| | | ||| | || || Sbjct 420 TGGTAGTAGACCCGAAAAGAGTTACAAGATTATCGGAAGGAGTAGTTGTTCTTGGCAGGG 479 Query 472 T--A--T-C--ATAGAGT-TGCAGTCTT-GAAATTTGCAACCAATGCCTGGAAGGTTACT 522 | | | | ||| | | | ||||||| | |||||||||||||||| |||||||||||| Sbjct 480 TAAAGTTACTGATACA-TATTCAGTCTTCG-AATTTGCAACCAATGCGTGGAAGGTTACT 537 Query 523 CATCGTACCAGTTTTGGCGAAGAGTTACAATCACTCGACTCTAATTC--TAGGGTCTCCC 580 ||| |||| ||||| |||| || | ||| | | || | | | | ||||||||||| Sbjct 538 GATCATACCCGTTTTCACGAAAAGCCAGAATTAATGGA--CGACTCCGGTAGGGTCTCCC 595 Query 581 TGAATGGAAATTTGTACTTGACAGGTTACAAATATCCCTACACTGGTCAGTGTTTCATCG 640 |||||||||||||||||| ||||| ||| || | |||| |||||||||||| |||||||| Sbjct 596 TGAATGGAAATTTGTACTGGACAGCTTATAATTCTCCCCACACTGGTCAGTATTTCATCG 655 Query 641 AAATGCTCGATTTTTCGAAAGAGAT-----A-A-T--AAAGATCTTTTGTATGCTACCGT 691 |||||||||||||||||||||||| | | | ||||| ||||||| | |||||| Sbjct 656 CAATGCTCGATTTTTCGAAAGAGATAGAAAAGAGTCGAAAGACCTTTTGTGTTTTACCGT 715 Query 692 GTAA-GGGaaaaaaaGGTACTTCCCATACTCGTATGCTTTCGATTTACAAGGGAGATCGG 750 |||| ||| |||||| ||||| | ||||||||||| || ||||||||||||||||||||| Sbjct 716 GTAAGGGGGAAAAAA-GTACTACACATACTCGTATCCTCTCGATTTACAAGGGAGATCGG 774 Query 751 TTTTCAGTGTTACAACAATGCAAAAGAACA-GGCGAGATTAAGATTTGGGTGACAGAGAA 809 |||||||||||| |||||| ||||| |||| || |||||| |||||||||||||| || | Sbjct 775 TTTTCAGTGTTAGAACAATCCAAAAAAACAAGG-GAGATTGAGATTTGGGTGACAAAGGA 833 Query 810 GAAAATTGGTAATGGGGATGACGGAGACAATGTGGTGTGGATTAATTTCATGACTGTCTC 869 |||||||||| |||||||| |||||| |||||||||||||||| |||||||| ||||| Sbjct 834 TCAAATTGGTAACGGGGATGATGGAGACGATGTGGTGTGGATTAAGTTCATGACAGTCTC 893 Query 870 AAGACCTGACTTCCCCAAATTACTTACTCCCATGTCTACAAGTTACTTTGTCGATAATAA 929 ||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||| | Sbjct 894 AAGACCTGACTTCCCCATATTACTTAGTTACATCTCTACAAGTTACTTTGTCGATAATGA 953 Query 930 TATCTATGGGAAGAGCTTCGTTCTGTGTTG-CAATAGCAAGAAACCTAGA-CAAGCTTGG 987 |||| ||||||||||||| ||||||||||| | |||||||| ||||| | || |||||| Sbjct 954 TATCCATGGGAAGAGCTTTGTTCTGTGTTGTCC-TAGCAAGAGACCTAAAGCA-GCTTGG 1011 Query 988 GTGTATATTGTGAGGGGAGATATGTGCAAAAAGATTAAGATAGGTGGAGTGGTATGCAAG 1047 ||||||||||||||||||||| ||||||||||||||||||||| | |||| |||| || Sbjct 1012 GTGTATATTGTGAGGGGAGATTTGTGCAAAAAGATTAAGATAGATCAAGTGCTATGTGAG 1071 Query 1048 TTTCAATCCTCTTTTTATGTTCCCAGTTTGATCACCATTTCTTGA 1092 |||||||||||| | |||||||||||||||||||||||| ||||| Sbjct 1072 TTTCAATCCTCTGTCTATGTTCCCAGTTTGATCACCATTCCTTGA 1116 > AT1G59630.1 | Symbols: | F-box associated ubiquitination effector family protein | chr1:21907177-21907955 REVERSE LENGTH=720 Length=720 Score = 664 bits (359), Expect = 0.0 Identities = 447/490 (91%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 605 GTTACAAATATCCCTACACTGGTCAGTGTTTCATCGAAATGCTCGATTTTTCGAAAGAGA 664 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 233 GTTACAAATATCCCGACACTGGTCAGTGTTTCATCGAAATGCTCGATCTTTCGAAAGAGG 292 Query 665 TAATAAAGATCTTTTGTATGCTACCGTGTAAGG-GaaaaaaaGGTACTTCCCATACTCGT 723 ||||||||||||||||||| ||||||||||||| ||| |||| |||||||| |||||||| Sbjct 293 TAATAAAGATCTTTTGTATCCTACCGTGTAAGGCGAATAAAA-GTACTTCCAATACTCGT 351 Query 724 ATGCTTTCGATTTACAAGGGAGATCGGTTTTCAGTGTTACAACAATGCAAAAGAACAGGC 783 || || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 352 ATCCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGTTACAACAAAGCAAAAGAACAGGG 411 Query 784 GAGATTAAGATTTGGGTGACAGAGAAGAAAATTGGTAATGGGGATGACGGAGACAATGTG 843 |||||||| |||||||||||||||||| |||||||||| |||||| | |||||| ||||| Sbjct 412 GAGATTAACATTTGGGTGACAGAGAAGGAAATTGGTAACGGGGATAATGGAGACGATGTG 471 Query 844 GTGTGGATTAATTTCATGACTGTCTCAAGACCTGACTTCCCCAAATTACTTACTCCCATG 903 |||||||| || ||||||||| ||||||||||||||||||||| |||||||| || ||| Sbjct 472 GTGTGGATGAAGTTCATGACTCTCTCAAGACCTGACTTCCCCATATTACTTAGTCACATC 531 Query 904 TCTACAAGTTACTTTGTCGATAATAATATCTATGGGAAGAGCTTCGTTCTGTGTTG-CAA 962 |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| | Sbjct 532 TCTACAAGTTACTTTGTCGATAATGATATCTATGGCAAGAGCTTGGTTCTGTGTTGTCC- 590 Query 963 TAGCAAGAAACCTAGACAAGCTTGGGTGTATATTGTGAGGGGAGATATGTGCAAAAAGAT 1022 ||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 591 TAGCACGAAACCTAGACAAGCTTGGGTCTATATTGTGAGGGGAGATCTGTGCAAAAAGAT 650 Query 1023 TAAGATAGGTGGAGTGGTATGCAAGTTTCAATCCTCTTTTTATGTTCCCAGTTTGATCAC 1082 |||||||| ||||||| ||| | |||||| |||||| |||||||||||||||||||||| Sbjct 651 TAAGATAGATGGAGTGCAATGTAGGTTTCAGTCCTCTGTTTATGTTCCCAGTTTGATCAC 710 Query 1083 CATTTCTTGA 1092 ||| ||||| Sbjct 711 CATAACTTGA 720 Score = 257 bits (139), Expect = 1e-67 Identities = 197/224 (88%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 332 GAGGCGTGGTTTGGAACCCGTTGTTGAGAAAGACTAAATTGATTGCCAAGGATGAG-AAT 390 ||||| |||||||||||||||||||||||| ||||||||||||||| |||||| || || Sbjct 20 GAGGCATGGTTTGGAACCCGTTGTTGAGAACGACTAAATTGATTGCGAAGGATAAGCAA- 78 Query 391 ATATGTGGCAGGAGCATGGGTTACGATGGTAGTAGACCCGAAAAGAGTTACAAGATTATT 450 |||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 79 ATATGTGGCAAGAGCATGGGTTACGATGGTACTAAACCCGAAAAGAGTTACAAGATTATT 138 Query 451 GGACGTTGCAGTACTAATTG-GTATC-ATAGAGTTGCAGTCTTGAAATTTGCAACCAATG 508 ||||| ||| ||||||| | | ||| ||||||||||||||||| || |||||||||| | Sbjct 139 GGACGGTGCTTTACTAAT-GCG-ATCTATAGAGTTGCAGTCTTGGAACTTGCAACCAACG 196 Query 509 CCTGGAAGGTTACTCATCGTACCAGTTTTGGCGAAGAGTTACAA 552 | |||||||| |||||| || |||| | | ||||||||||||| Sbjct 197 CGTGGAAGGT-ACTCATTGTCCCAGATCTCACGAAGAGTTACAA 239 > AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-14639934 FORWARD LENGTH=729 Length=729 Score = 263 bits (142), Expect = 3e-69 Identities = 256/308 (83%), Gaps = 20/308 (6%) Strand=Plus/Plus Query 17 CGAGAAAGCTTCCATCAGAGCTAGAAGAGGAGATACTCTTCCGAGTGCCACCTCGATCTC 76 ||| ||||||||||| ||| || ||||| ||||||||||| ||||| ||||||||||||| Sbjct 8 CGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCTCGATCTC 67 Query 77 T-CGTTCGCTTCAGATCCGTTTGCAAAGAGTGGAACACTCTTTTCCACA-ATAAGAGATT 134 | | || |||| ||||||||||||||||| |||||| ||| |||||| | |||||||||| Sbjct 68 TCCATT-GCTTTAGATCCGTTTGCAAAGAATGGAACGCTC-TTTCCAGAGATAAGAGATT 125 Query 135 CATCAACAAAAACTTTGCTTGCAATCGC-CCAGAATTCGTGTTAACGACACATTCCCATA 193 ||||||||||||||||||||| || | ||||||||| | |||| ||||| |||| ||| Sbjct 126 AATCAACAAAAACTTTGCTTGCGCTC-CTCCAGAATTCATCTTAAAGACACGTTCCAATA 184 Query 194 TTTATTCGATAAGCGTCAATCTCAA---TGACGATCCAACTATGAAA-GTGCACGATTTA 249 ||||||||||||||||||||||||| |||| |||||||||| ||| |||| || ||| Sbjct 185 TTTATTCGATAAGCGTCAATCTCAACGATGACAATCCAACTAT-AAATGTGCGTGACTTA 243 Query 250 TGCGTTG---AT--TT-ACACCGTCTCCGTTATTCTCTCTATGGGACTTGCGATGGTAAC 303 ||| ||| || || || ||| | |||||||||||||||| |||||||||||| Sbjct 244 TGCTTTGGTGATCATTTACGGGGTCAAC---ATTCTCTCTATGGGACCTGCGATGGTAAC 300 Query 304 TTATTCTT 311 || ||||| Sbjct 301 TTCTTCTT 308 Score = 67.6 bits (36), Expect = 2e-10 Identities = 36/36 (100%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 416 ATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTG 451 |||||||||||||||||||||||||||||||||||| Sbjct 340 ATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTG 375 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53513780970 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5