BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907534
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58090.1 | Symbols: | F-box and associated interaction doma... 987 0.0
AT1G59630.1 | Symbols: | F-box associated ubiquitination effec... 664 0.0
AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-... 263 3e-69
> AT1G58090.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:21510510-21511625 FORWARD LENGTH=1116
Length=1116
Score = 987 bits (534), Expect = 0.0
Identities = 939/1125 (83%), Gaps = 65/1125 (6%)
Strand=Plus/Plus
Query 17 CGAGAAAGCTTCCATCAGAGCTAGAAGAGGAGATACTCTTCCGAGTGCCACCTCGATCTC 76
||| ||||||||||| ||| || ||||| ||||||||||| ||||| |||||||||||||
Sbjct 8 CGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCTCGATCTC 67
Query 77 TCGTTCGCTTCAGATCCGTTTGCAAAGAGTGGAACACTCTTTTCCACAATAAGAGATTCA 136
|||||||||||||||||||||||| ||| ||||||||||||||| | |||||||||||||
Sbjct 68 TCGTTCGCTTCAGATCCGTTTGCAGAGAATGGAACACTCTTTTCAAGAATAAGAGATTCA 127
Query 137 TCAACAAAAACTTTGCTTGCAATCGCCCAGAATTCGTGTTAACGACACATTCCCATATTT 196
|||||||||||||||||||| ||| |||||| || |||||| |||||||| |||||||
Sbjct 128 TCAACAAAAACTTTGCTTGCGGTCGGCCAGAAATCATGTTAAATACACATTCACATATTT 187
Query 197 ATTCGATAAGCGTCAATCTCAATGACG---ATCCAACTATGAAA-GTGCACGATTTATGC 252
|||||||||||||| ||||||| |||| |||||||||| ||| |||| |||||| ||
Sbjct 188 ATTCGATAAGCGTCGATCTCAAAGACGAAAATCCAACTAT-AAAGGTGCGTGATTTACGC 246
Query 253 GTTG---ATTTACA-CCGTCTCCGTTATTC-TCTCTATGGGACT-TGCGATGGTAACTTA 306
||| ||||| | | | | |||| || ||| ||||||| | ||||||||||||
Sbjct 247 TTTGATCATTTA-AGTTGCCGCGGTTA-TCATCTGTATGGGA-TCTGCGATGGTAAC--- 300
Query 307 TTCTTCATGTAT-G-ATTCTT-A--CA-AAAGAGGCGTGGTTTGGAACCCGTTG--TT-G 357
|||||||||||| | ||||| | | ||||||| ||||||||||||||| || |
Sbjct 301 TTCTTCATGTATAGCTTTCTTAATGGAGGCGGAGGCGTTGTTTGGAACCCGTTGTTTTGG 360
Query 358 AGAAAGACTAAATTGATTGCCAAGGATGAGAATATATGTGGC-AGGAGCATGGGTTACGA 416
||| ||||||||| ||||||||||| |||||||| ||||||| ||| ||| ||||||||
Sbjct 361 AGACAGACTAAATGGATTGCCAAGGCTGAGAATACATGTGGCAAGG-CCATTGGTTACGA 419
Query 417 TGGTAGTAGACCCGAAAAGAGTTACAAGATTATTGGACGTTGCAGTACTAATT-----GG 471
||||||||||||||||||||||||||||||||| ||| | | ||| | || ||
Sbjct 420 TGGTAGTAGACCCGAAAAGAGTTACAAGATTATCGGAAGGAGTAGTTGTTCTTGGCAGGG 479
Query 472 T--A--T-C--ATAGAGT-TGCAGTCTT-GAAATTTGCAACCAATGCCTGGAAGGTTACT 522
| | | | ||| | | | ||||||| | |||||||||||||||| ||||||||||||
Sbjct 480 TAAAGTTACTGATACA-TATTCAGTCTTCG-AATTTGCAACCAATGCGTGGAAGGTTACT 537
Query 523 CATCGTACCAGTTTTGGCGAAGAGTTACAATCACTCGACTCTAATTC--TAGGGTCTCCC 580
||| |||| ||||| |||| || | ||| | | || | | | | |||||||||||
Sbjct 538 GATCATACCCGTTTTCACGAAAAGCCAGAATTAATGGA--CGACTCCGGTAGGGTCTCCC 595
Query 581 TGAATGGAAATTTGTACTTGACAGGTTACAAATATCCCTACACTGGTCAGTGTTTCATCG 640
|||||||||||||||||| ||||| ||| || | |||| |||||||||||| ||||||||
Sbjct 596 TGAATGGAAATTTGTACTGGACAGCTTATAATTCTCCCCACACTGGTCAGTATTTCATCG 655
Query 641 AAATGCTCGATTTTTCGAAAGAGAT-----A-A-T--AAAGATCTTTTGTATGCTACCGT 691
|||||||||||||||||||||||| | | | ||||| ||||||| | ||||||
Sbjct 656 CAATGCTCGATTTTTCGAAAGAGATAGAAAAGAGTCGAAAGACCTTTTGTGTTTTACCGT 715
Query 692 GTAA-GGGaaaaaaaGGTACTTCCCATACTCGTATGCTTTCGATTTACAAGGGAGATCGG 750
|||| ||| |||||| ||||| | ||||||||||| || |||||||||||||||||||||
Sbjct 716 GTAAGGGGGAAAAAA-GTACTACACATACTCGTATCCTCTCGATTTACAAGGGAGATCGG 774
Query 751 TTTTCAGTGTTACAACAATGCAAAAGAACA-GGCGAGATTAAGATTTGGGTGACAGAGAA 809
|||||||||||| |||||| ||||| |||| || |||||| |||||||||||||| || |
Sbjct 775 TTTTCAGTGTTAGAACAATCCAAAAAAACAAGG-GAGATTGAGATTTGGGTGACAAAGGA 833
Query 810 GAAAATTGGTAATGGGGATGACGGAGACAATGTGGTGTGGATTAATTTCATGACTGTCTC 869
|||||||||| |||||||| |||||| |||||||||||||||| |||||||| |||||
Sbjct 834 TCAAATTGGTAACGGGGATGATGGAGACGATGTGGTGTGGATTAAGTTCATGACAGTCTC 893
Query 870 AAGACCTGACTTCCCCAAATTACTTACTCCCATGTCTACAAGTTACTTTGTCGATAATAA 929
||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||| |
Sbjct 894 AAGACCTGACTTCCCCATATTACTTAGTTACATCTCTACAAGTTACTTTGTCGATAATGA 953
Query 930 TATCTATGGGAAGAGCTTCGTTCTGTGTTG-CAATAGCAAGAAACCTAGA-CAAGCTTGG 987
|||| ||||||||||||| ||||||||||| | |||||||| ||||| | || ||||||
Sbjct 954 TATCCATGGGAAGAGCTTTGTTCTGTGTTGTCC-TAGCAAGAGACCTAAAGCA-GCTTGG 1011
Query 988 GTGTATATTGTGAGGGGAGATATGTGCAAAAAGATTAAGATAGGTGGAGTGGTATGCAAG 1047
||||||||||||||||||||| ||||||||||||||||||||| | |||| |||| ||
Sbjct 1012 GTGTATATTGTGAGGGGAGATTTGTGCAAAAAGATTAAGATAGATCAAGTGCTATGTGAG 1071
Query 1048 TTTCAATCCTCTTTTTATGTTCCCAGTTTGATCACCATTTCTTGA 1092
|||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 1072 TTTCAATCCTCTGTCTATGTTCCCAGTTTGATCACCATTCCTTGA 1116
> AT1G59630.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:21907177-21907955 REVERSE LENGTH=720
Length=720
Score = 664 bits (359), Expect = 0.0
Identities = 447/490 (91%), Gaps = 4/490 (1%)
Strand=Plus/Plus
Query 605 GTTACAAATATCCCTACACTGGTCAGTGTTTCATCGAAATGCTCGATTTTTCGAAAGAGA 664
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 233 GTTACAAATATCCCGACACTGGTCAGTGTTTCATCGAAATGCTCGATCTTTCGAAAGAGG 292
Query 665 TAATAAAGATCTTTTGTATGCTACCGTGTAAGG-GaaaaaaaGGTACTTCCCATACTCGT 723
||||||||||||||||||| ||||||||||||| ||| |||| |||||||| ||||||||
Sbjct 293 TAATAAAGATCTTTTGTATCCTACCGTGTAAGGCGAATAAAA-GTACTTCCAATACTCGT 351
Query 724 ATGCTTTCGATTTACAAGGGAGATCGGTTTTCAGTGTTACAACAATGCAAAAGAACAGGC 783
|| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 352 ATCCTCTCGATTTACAAGGGAGATCGGTTTTCAGTGTTACAACAAAGCAAAAGAACAGGG 411
Query 784 GAGATTAAGATTTGGGTGACAGAGAAGAAAATTGGTAATGGGGATGACGGAGACAATGTG 843
|||||||| |||||||||||||||||| |||||||||| |||||| | |||||| |||||
Sbjct 412 GAGATTAACATTTGGGTGACAGAGAAGGAAATTGGTAACGGGGATAATGGAGACGATGTG 471
Query 844 GTGTGGATTAATTTCATGACTGTCTCAAGACCTGACTTCCCCAAATTACTTACTCCCATG 903
|||||||| || ||||||||| ||||||||||||||||||||| |||||||| || |||
Sbjct 472 GTGTGGATGAAGTTCATGACTCTCTCAAGACCTGACTTCCCCATATTACTTAGTCACATC 531
Query 904 TCTACAAGTTACTTTGTCGATAATAATATCTATGGGAAGAGCTTCGTTCTGTGTTG-CAA 962
|||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |
Sbjct 532 TCTACAAGTTACTTTGTCGATAATGATATCTATGGCAAGAGCTTGGTTCTGTGTTGTCC- 590
Query 963 TAGCAAGAAACCTAGACAAGCTTGGGTGTATATTGTGAGGGGAGATATGTGCAAAAAGAT 1022
||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 591 TAGCACGAAACCTAGACAAGCTTGGGTCTATATTGTGAGGGGAGATCTGTGCAAAAAGAT 650
Query 1023 TAAGATAGGTGGAGTGGTATGCAAGTTTCAATCCTCTTTTTATGTTCCCAGTTTGATCAC 1082
|||||||| ||||||| ||| | |||||| |||||| ||||||||||||||||||||||
Sbjct 651 TAAGATAGATGGAGTGCAATGTAGGTTTCAGTCCTCTGTTTATGTTCCCAGTTTGATCAC 710
Query 1083 CATTTCTTGA 1092
||| |||||
Sbjct 711 CATAACTTGA 720
Score = 257 bits (139), Expect = 1e-67
Identities = 197/224 (88%), Gaps = 7/224 (3%)
Strand=Plus/Plus
Query 332 GAGGCGTGGTTTGGAACCCGTTGTTGAGAAAGACTAAATTGATTGCCAAGGATGAG-AAT 390
||||| |||||||||||||||||||||||| ||||||||||||||| |||||| || ||
Sbjct 20 GAGGCATGGTTTGGAACCCGTTGTTGAGAACGACTAAATTGATTGCGAAGGATAAGCAA- 78
Query 391 ATATGTGGCAGGAGCATGGGTTACGATGGTAGTAGACCCGAAAAGAGTTACAAGATTATT 450
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 79 ATATGTGGCAAGAGCATGGGTTACGATGGTACTAAACCCGAAAAGAGTTACAAGATTATT 138
Query 451 GGACGTTGCAGTACTAATTG-GTATC-ATAGAGTTGCAGTCTTGAAATTTGCAACCAATG 508
||||| ||| ||||||| | | ||| ||||||||||||||||| || |||||||||| |
Sbjct 139 GGACGGTGCTTTACTAAT-GCG-ATCTATAGAGTTGCAGTCTTGGAACTTGCAACCAACG 196
Query 509 CCTGGAAGGTTACTCATCGTACCAGTTTTGGCGAAGAGTTACAA 552
| |||||||| |||||| || |||| | | |||||||||||||
Sbjct 197 CGTGGAAGGT-ACTCATTGTCCCAGATCTCACGAAGAGTTACAA 239
> AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-14639934
FORWARD LENGTH=729
Length=729
Score = 263 bits (142), Expect = 3e-69
Identities = 256/308 (83%), Gaps = 20/308 (6%)
Strand=Plus/Plus
Query 17 CGAGAAAGCTTCCATCAGAGCTAGAAGAGGAGATACTCTTCCGAGTGCCACCTCGATCTC 76
||| ||||||||||| ||| || ||||| ||||||||||| ||||| |||||||||||||
Sbjct 8 CGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCTCGATCTC 67
Query 77 T-CGTTCGCTTCAGATCCGTTTGCAAAGAGTGGAACACTCTTTTCCACA-ATAAGAGATT 134
| | || |||| ||||||||||||||||| |||||| ||| |||||| | ||||||||||
Sbjct 68 TCCATT-GCTTTAGATCCGTTTGCAAAGAATGGAACGCTC-TTTCCAGAGATAAGAGATT 125
Query 135 CATCAACAAAAACTTTGCTTGCAATCGC-CCAGAATTCGTGTTAACGACACATTCCCATA 193
||||||||||||||||||||| || | ||||||||| | |||| ||||| |||| |||
Sbjct 126 AATCAACAAAAACTTTGCTTGCGCTC-CTCCAGAATTCATCTTAAAGACACGTTCCAATA 184
Query 194 TTTATTCGATAAGCGTCAATCTCAA---TGACGATCCAACTATGAAA-GTGCACGATTTA 249
||||||||||||||||||||||||| |||| |||||||||| ||| |||| || |||
Sbjct 185 TTTATTCGATAAGCGTCAATCTCAACGATGACAATCCAACTAT-AAATGTGCGTGACTTA 243
Query 250 TGCGTTG---AT--TT-ACACCGTCTCCGTTATTCTCTCTATGGGACTTGCGATGGTAAC 303
||| ||| || || || ||| | |||||||||||||||| ||||||||||||
Sbjct 244 TGCTTTGGTGATCATTTACGGGGTCAAC---ATTCTCTCTATGGGACCTGCGATGGTAAC 300
Query 304 TTATTCTT 311
|| |||||
Sbjct 301 TTCTTCTT 308
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 416 ATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTG 451
||||||||||||||||||||||||||||||||||||
Sbjct 340 ATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTG 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5