BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907546
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59550.1 | Symbols: | UBX domain-containing protein | chr1:... 1114 0.0
AT4G14250.1 | Symbols: | structural constituent of ribosome | ... 514 6e-145
> AT1G59550.1 | Symbols: | UBX domain-containing protein | chr1:21879649-21880788
REVERSE LENGTH=924
Length=924
Score = 1114 bits (603), Expect = 0.0
Identities = 831/937 (89%), Gaps = 32/937 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAGTGACCACCAGAGAAAACTGGTCTCATCTTTCCTCGAGATCGCTGTAGATCAA 60
||||||||| || | ||||||| |||||||||| |||||||| | ||| |||||||||||
Sbjct 1 ATGGAGAGTAACTATCAGAGAACACTGGTCTCAGCTTTCCTCAATATCTCTGTAGATCAA 60
Query 61 ACCGTGGAAACCGCTATAAAGTGCCTAAACG-CAACAAATTGGAAGGTTGAAGAAGCCAT 119
|| |||||||||||||||||||| ||||| | | |||||||||||| ||||||| |||||
Sbjct 61 ACTGTGGAAACCGCTATAAAGTGTCTAAA-GTCTACAAATTGGAAGCTTGAAGATGCCAT 119
Query 120 TAATCTCTTCTTT-CTCATCGACAG-A--AG--A-AACCAATCTTCGACACAAAAACCTT 172
|||||||| ||| | ||||||||| | || | || ||| ||| ||||| ||||||||
Sbjct 120 CAATCTCTTATTTGC-CATCGACAGAATGAGAAATAATCAAACTTTGACACTAAAACCTT 178
Query 173 CTGATTCTTCTACTAAATTGTCTTCCTTG--TAC-CGTCCTTCTCTAAATCTGCTTTTCA 229
| || | ||||||| |||| |||||||| | | | |||| |||||||||||||||| |
Sbjct 179 CCGA--C-TCTACTAGATTGCCTTCCTTGTCTCCTCCTCCTCCTCTAAATCTGCTTTTTA 235
Query 230 ACGGTTCGTTTGAAGACGCGAAAGC-AACTTCCTCTAGCGAAGATCTGTGGTTGCTTGTT 288
| |||||||| |||||||||||| | | |||| |||||| ||||||| ||||||||||||
Sbjct 236 ATGGTTCGTTCGAAGACGCGAAA-CTAGCTTCTTCTAGCAAAGATCTATGGTTGCTTGTT 294
Query 289 CACATCCAATCCAAAACTGAGTTGCCTTGTAATACACTTAACCGAGATTTATGGTCAAAC 348
|| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 295 CATATCCAATCCGAAACTGAGTTTCCTTGTAATACATTTAACCGAGATTTATGGTCAAAC 354
Query 349 GACGACGTTTCTCAAGCCCTTGAGTTTAGCGGCGAGATTAAAGCTCAGAGTTTTCTTGAG 408
|| |||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||
Sbjct 355 GAAGACGTTTCTCAAGCCCTTGAGTTTAGGGGCGAGATTAAAGCTAAGGGTTTTCTTAAG 414
Query 409 GATTTGAAGAAGTATATTGATGCTACTCCTCACGAATACT-TTGCTTCTATGGCAAGGAA 467
||||||||||||||||||||||||| |||||||||| | | ||||||||| |||||||||
Sbjct 415 GATTTGAAGAAGTATATTGATGCTAGTCCTCACGAACA-TATTGCTTCTACGGCAAGGAA 473
Query 468 CATGCGCGTaaaaacaaaaaaGATTTGCCATCT-TGAT---CGAGACATGGTGAA-TTCT 522
||||||||||||| || ||||||||||||| || |||| | |||||||| ||| || |
Sbjct 474 CATGCGCGTAAAAGCAGAAAAGATTTGCCA-CTCTGATCAACAAGACATGGGGAATTTGT 532
Query 523 CCGTCAGATCGCGTCGTGGTTTCTTCTTCCGGGCAAGAATTTGAAGATGTAATAATGACT 582
| |||||| |||||||||||||||||| ||||| ||||||||| |||| || |||||
Sbjct 533 -CATCAGATAGCGTCGTGGTTTCTTCTTGCGGGCGAGAATTTGATGATG---TAGTGACT 588
Query 583 TTATCCGAACATGAGGAGGAAACTTGTTTGTCAAGCAACATGTTTAAGTTCCCGGTTTTG 642
||||||||| |||||||||||||||||||||||||| || ||||| ||||||| ||||||
Sbjct 589 TTATCCGAAGATGAGGAGGAAACTTGTTTGTCAAGCGACCTGTTTGAGTTCCCAGTTTTG 648
Query 643 ACAGAAGAGCCTAAAGGAGACTGTGATCGAAGTGTTGTCTGCAGTATCAGCGTTCAATTT 702
||| |||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 649 ACAAAAGAGCCTAAAGGAGACTGTGATCGAAGCGTTGTCTGTAGTATCAGCGTTCGATTT 708
Query 703 CCAAATGGGAGAAGAAAGCAGAGAAAGTTTCTTAAGAGTGAACCGATTCAGCTTCTCTGG 762
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 709 CCAAATGGGAGAAGAAAGCAGAGAAAGTTTCTCAAGAGTGAACCGGTTCAGCTTCTCTGG 768
Query 763 TCTTTCTGTTATTCTCACATGGAGGAATCAGAGAAGAAGGCGTTCAAGCTAGTGCAAGCG 822
||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct 769 TCTTTCTGTTATTCTCACATGGATGAATCAGATAACAAGGCGTTCAAGCTAGTGCAGGCG 828
Query 823 ATTCCTGGTGCTTCCAAGACTCTGCATTATGGAGCT-AAGGCCACGTTTGATCAATCTGG 881
|||||||||||||||||||||||| ||||||||||| ||| || |||||||||||| |||
Sbjct 829 ATTCCTGGTGCTTCCAAGACTCTGGATTATGGAGCTGAAG-CCTCGTTTGATCAATATGG 887
Query 882 GATCGCTAATTCGATCATTTCGGTTACTTGGGAGTGA 918
|||||||||||||||||| ||||||||||||||||||
Sbjct 888 GATCGCTAATTCGATCATCTCGGTTACTTGGGAGTGA 924
> AT4G14250.1 | Symbols: | structural constituent of ribosome
| chr4:8208748-8213237 REVERSE LENGTH=2703
Length=2703
Score = 514 bits (278), Expect = 6e-145
Identities = 354/391 (91%), Gaps = 3/391 (1%)
Strand=Plus/Plus
Query 524 CGTCAGATCGCGTCGTGGTTTCTTCTTCCGGGCAAGAATTTGAAGATGTAATAATGACTT 583
|||| |||||||| |||| | |||||| |||| |||||||||||| ||||||||||
Sbjct 749 CGTCTGATCGCGTTGTGGCTCCTTCTTGGGGGCCAGAATTTGAAGA---CATAATGACTT 805
Query 584 TATCCGAACATGAGGAGGAAACTTGTTTGTCAAGCAACATGTTTAAGTTCCCGGTTTTGA 643
|||||||||||||||||||||||||||||||| || || || || |||| ||||||||||
Sbjct 806 TATCCGAACATGAGGAGGAAACTTGTTTGTCATGCGACCTGCTTGAGTTTCCGGTTTTGA 865
Query 644 CAGAAGAGCCTAAAGGAGACTGTGATCGAAGTGTTGTCTGCAGTATCAGCGTTCAATTTC 703
||||||||||||||| |||||||||| |||| ||||| |||||||| | |||| |||||
Sbjct 866 CAGAAGAGCCTAAAGCAGACTGTGATAGAAGCGTTGTGTGCAGTATTTGTGTTCGATTTC 925
Query 704 CAAATGGGAGAAGAAAGCAGAGAAAGTTTCTTAAGAGTGAACCGATTCAGCTTCTCTGGT 763
|| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 926 CAGATGGGAGAAGAAAGCAGAGGAAGTTTCTCAAGAGCGAACCGATTCAGCTTCTCTGGT 985
Query 764 CTTTCTGTTATTCTCACATGGAGGAATCAGAGAAGAAGGCGTTCAAGCTAGTGCAAGCGA 823
|||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||| ||||
Sbjct 986 CTTTCTGTTATTCTCACATGGAGGAATCCGAGAAAAAGGAGTTCAAGCTTGTGCAGGCGA 1045
Query 824 TTCCTGGTGCTTCCAAGACTCTGCATTATGGAGCTAAGGCCACGTTTGATCAATCTGGGA 883
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1046 TTCCTGGTGCTTCCAAGACTCTGGATTATGGAGCTAAGGCCACGTTTGATCAATCTGGGA 1105
Query 884 TCGCTAATTCGATCATTTCGGTTACTTGGGA 914
||||||||||||| ||||| |||||||||||
Sbjct 1106 TCGCTAATTCGATGATTTCAGTTACTTGGGA 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5