BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907578

Length=852
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G58400.1 | Symbols:  | Disease resistance protein (CC-NBS-LR...   161    8e-39


> AT1G58400.1 | Symbols:  | Disease resistance protein (CC-NBS-LRR 
class) family | chr1:21696165-21699118 REVERSE LENGTH=2703
Length=2703

 Score =  161 bits (87),  Expect = 8e-39
 Identities = 249/325 (77%), Gaps = 19/325 (6%)
 Strand=Plus/Plus

Query  69    TAACAACAATTCTA-TTGACAATGTATTATCTTTGAGCTTCGAAGAGTTGCCTAGTTATT  127
             |||||||| ||| | || || ||||||| ||| ||||||| |||||||||||||||||||
Sbjct  1182  TAACAACAGTTC-AGTTTACCATGTATTGTCTCTGAGCTTTGAAGAGTTGCCTAGTTATT  1240

Query  128   TGAAGCATTATTTTCTTTACCTCGCTCATTTTCCAGAAGATTATG-CA-ATAGTTGTAGA  185
             |||||||||  || || ||| | || ||||||||||||||| ||  || | ||  |||||
Sbjct  1241  TGAAGCATTGCTTCCTCTACTTGGCCCATTTTCCAGAAGATCATAACATAAAG--GTAGA  1298

Query  186   GGATTTGGCCTATTACTGGGCTGCAGAAGGAATACCA-AGGC-CGAGGTATTACGATGGA  243
               | ||| | ||||  |||||||| |||||||||  | |  | |||   ||||| |||||
Sbjct  1299  AAAATTGTCTTATTGTTGGGCTGCTGAAGGAATATTAGAACCTCGAC--ATTACCATGGA  1356

Query  244   GCA-ACCATTAGACAGGTCGCA-AATGGATATATAGAAGAATTGGTGAAGAGAAACATGG  301
              || || ||| || | || | | || |  || ||||| || || |||| |||||| ||||
Sbjct  1357  -CAGACTATTCGAGATGTTGGAGAAAGC-TACATAGAGGAGTTAGTGAGGAGAAATATGG  1414

Query  302   TTATTTCTAAAAGAGACGCTA-GAACTTCAAGATTTGAAACATGTCAGCTT-CATGATGT  359
             ||||| |  ||||||| | || || |||  ||||||||| | |||||  || |||||  |
Sbjct  1415  TTATTGCCGAAAGAGATGTTACGA-CTTTGAGATTTGAAGCTTGTCAT-TTGCATGACAT  1472

Query  360   GATGAGAGAAGTTTGTCTTCTTAAA  384
             |||||||||||||||| || |||||
Sbjct  1473  GATGAGAGAAGTTTGT-TTGTTAAA  1496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41543639569


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5