BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907601
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58110.1 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 1640 0.0
> AT1G58110.1 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr1:21515474-21517828 REVERSE
LENGTH=1631
Length=1631
Score = 1640 bits (888), Expect = 0.0
Identities = 1049/1127 (93%), Gaps = 10/1127 (1%)
Strand=Plus/Plus
Query 1 ATGGCTAGCTCTAAAGGATCACAGAGTGTTAGAAACTTGATGTACCCAGGAAAGCATGCT 60
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 62 ATGGCTAGCTCCAAGGGATCACAGAGTGTTAGAAACTTGATGTACCCGGGAAAGCATGCT 121
Query 61 TTGCTCCCACCAAAAATTCCCTTTCCTAGTGTTTCAGCATCGTATTCTGAGTATATTCCA 120
||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||
Sbjct 122 TTGCTCCCACCAAAAATACCGTTTCCTAGTGTATCAGCATCGTATTCCGAGTATATTCCT 181
Query 121 AGTGGTTTGATTGGTTCAAGGCATGGTCAGAAGCTTAGTGATGAGAAAACGCATCACCAG 180
| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 182 ACTGGTTTGATTGGTTCAAGACATGGTCAGAAGCTTAGTAATGAGAAAACACATCACCAG 241
Query 181 CGGACTTCTTCTGAGAGCCATTTGGTAGAAGAGCTTCCTTTTTGGCTTGATGATCTTCTC 240
|| ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 242 CGAACTTCCTCCGAGAGCCATTTGGTAGAAGAGCTTCCCTTTTGGCTTGATGATCTTCTC 301
Query 241 AAT--G-AGCCGGAAAGCCCTGCTCGCAAATGTGGTCATCGGCGTTCATCAAGTGACTCT 297
||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 302 AATGAGCAGCCGGAAAGCCCTGCTCGAAAATGTGGTCATCGGCGTTCATCAAGTGACTCT 361
Query 298 TACGCGTATCTAGATGTGGCTAATGCTACAAACATAAGTTTGACTCTTCAAAATGATTTC 357
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 362 TACGCTTATCTAGATGTGGCTAATGCTACAAACATAAGTTTGACTCTCCAAAATGATTTC 421
Query 358 AGTTATAGGAATACGGTTTCT-TCCACTCAAAGGGGAATTCAGGAGCTTGACCGGAATAA 416
|||||||||||||| |||| | ||||||||||| ||| | || |||||||||||||||||
Sbjct 422 AGTTATAGGAATACTGTTT-TATCCACTCAAAGAGGAGTCCAAGAGCTTGACCGGAATAA 480
Query 417 AAATGCTCAAGATGCCGCTTTCTACTCTGATGCTAATTTTCTGAAACAGAAGAGTCGACA 476
||||||||| ||||| || |||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 481 AAATGCTCAGGATGCTGCCTTCTACTCTGGTGCTAGTTTTCTGAAACAGAAGAGTCGTCA 540
Query 477 GCGGGATTCTTTGGTGGCATCTGGCGCTCGTCCTTCTTGGCTACCTTTCGCTCGAGAGAG 536
||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||| ||||
Sbjct 541 GCGGGATTCTTTGGTGGCAACTGGGGCTTGTCCTTCTTGGTTACCTTTCGCTCGTGAGAA 600
Query 537 TGCTGGCGGGAAAAACATGGGATCGTTATATATGTCTCAAGATGCAACAGTAATA---AC 593
| |||||| |||||| ||||| | |||||||||||||||||||||||||||||| |
Sbjct 601 CGGTGGCGGAAAAAACTTGGGAGCTTTATATATGTCTCAAGATGCAACAGTAATATCGTC 660
Query 594 AGAAAGAAAGAACTATGCCGAACCTCTTTCTCATGACCCGAAA-ATGTTATCTTTTGAGG 652
|||||||||||||||||| |||||| ||||||||||||| ||| |||||||||| |||||
Sbjct 661 AGAAAGAAAGAACTATGCTGAACCTTTTTCTCATGACCC-AAAGATGTTATCTTCTGAGG 719
Query 653 AAAACAACTCCAATCCTCCACCTGTGACTTATGAAGCTGACAATACGAAACGAGCCAAAC 712
||||||||||||||||| | ||||||||||||||||||||||| || |||||||||||||
Sbjct 720 AAAACAACTCCAATCCTTCGCCTGTGACTTATGAAGCTGACAACACAAAACGAGCCAAAC 779
Query 713 AGCAATTTGCACAACGATCACGGGTCCGTAAGCTCCAATACATATCTGAGCTAGAAAGAA 772
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 AGCAATTTGCACAAAGATCACGGGTCCGTAAGCTCCAGTACATATCTGAGCTAGAAAGAA 839
Query 773 ATGTACAAACATTGCAGGCAGAAGGCTCCAAAGTTTCAGCTGAACTTGATTTTCTCAACC 832
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATGTACAGACATTGCAGGCAGAAGGCTCCAAAGTTTCAGCTGAACTTGATTTTCTCAACC 899
Query 833 AGAGAAATCTTATTCTGAGTATGGAAAATAAAGCTCTTAAGCAGCGACTCGAAACTATAG 892
|||| |||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||
Sbjct 900 AGAGGAATCTTATTCTGAGTATGGAAAATAAAGCTCTCAAGAAGCGTCTCGAAAGTATAG 959
Query 893 CTCAGGAGAAGCTTATCAAACAGTTGGAACAAGAACTGTTGGAAAAGGAGATTGGAAGAC 952
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct 960 CTCAGGAGAAGCTTATCAAACAATTGGAACAAGAAGTGTTGGAAAAGGAGATTGGGAGAC 1019
Query 953 TACGAGCGTTGTATCAGCAACAACAACAAACTCCAAAACCATCAGCAACTCGCGGACGTG 1012
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1020 TACGAGCGTTGTATCAGCAACAACAACAAACTCAAAAACCATCAGCCAGTCGCGGACGTG 1079
Query 1013 CTGCTAGCAAAGATCTCGACTCTCAGTTCTCGAGTCTTTCCCTCAACACCAAAGATTCCA 1072
|| |||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 1080 CTACTAGCAAAGATCTCGACTCTCAGTTCTCCAGTCTTTCACTGAACACCAAAGATTCCA 1139
Query 1073 ACTGTAGGCGTGACTCTGTATCTGTGATGGGTCAATTCCACTTTTAG 1119
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ACTGTAGGCGTGACTCTGTATCTGTGATGGGTCAATTCCACTTTTAG 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5