BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907619

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11410.1 | Symbols: ATPP2CA, AHG3, PP2CA | protein phosphata...   207    4e-53


> AT3G11410.1 | Symbols: ATPP2CA, AHG3, PP2CA | protein phosphatase 
2CA | chr3:3583883-3585790 REVERSE LENGTH=1639
Length=1639

 Score =  207 bits (112),  Expect = 4e-53
 Identities = 244/304 (80%), Gaps = 24/304 (8%)
 Strand=Plus/Plus

Query  11    AGGTAACAGTGACAGATCGTACCGACGACGACGAGTGTTTGATCTTGGCGAGTGATGGAC  70
             ||||||||||||| ||||| || || || || ||||||||||||||||||||||||||||
Sbjct  1067  AGGTAACAGTGACGGATCGAACTGATGAGGATGAGTGTTTGATCTTGGCGAGTGATGGAC  1126

Query  71    TATGGAACGTTGTACCAAATGAGACGGCGTTATGGTACAACGTTGTGC-TGTGCCCTCGA  129
             ||||| | ||||||||||| ||||||||||  |||  |   | |  || |||||| ||||
Sbjct  1127  TATGGGATGTTGTACCAAACGAGACGGCGTG-TGG--CGTGGCTC-GCATGTGCCTTCGA  1182

Query  130   GGTGCTGGTAGAGCGGATTGTGATGATTCTGTTGCAGCAGCCGTAGACAATGCTTGCTCT  189
             ||||||||| |  |||   |||| || || | ||| || ||   |  |||||| ||||| 
Sbjct  1183  GGTGCTGGT-G--CGG---GTGACGACTCAGATGCGGC-GC---A--CAATGCGTGCTCC  1230

Query  190   GATGCTTCTTTGCTATTAACGAAGTTTGCTCTAGCAAGACCA-AGCTTTGATAACGTGAG  248
             |||||  | ||||| ||||| ||||| ||||||||||||| | ||||  |||||||||||
Sbjct  1231  GATGCGGCGTTGCTCTTAACAAAGTTGGCTCTAGCAAGAC-AGAGCTCCGATAACGTGAG  1289

Query  249   CGTTGTGGTGCAGTGGTTGACAGGAGGAAGAGGAGGAATAATCAATCATCGTCTTAATAA  308
             ||| ||  ||   ||||||||  |||||||||||||||||||||| | ||||||||||||
Sbjct  1290  CGTCGT--TG---TGGTTGACTTGAGGAAGAGGAGGAATAATCAAGCGTCGTCTTAATAA  1344

Query  309   TTAG  312
             ||||
Sbjct  1345  TTAG  1348



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5