BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907620
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58242.1 | Symbols: | Plant thionin family protein | chr1:2... 274 3e-73
AT5G36805.1 | Symbols: | Plant thionin family protein | chr5:1... 272 1e-72
AT5G36720.1 | Symbols: | Plant thionin family protein | chr5:1... 272 1e-72
AT3G24465.1 | Symbols: | Plant thionin family protein | chr3:8... 272 1e-72
AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:1... 261 2e-69
AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:1... 250 5e-66
> AT1G58242.1 | Symbols: | Plant thionin family protein | chr1:21581964-21582370
REVERSE LENGTH=407
Length=407
Score = 274 bits (148), Expect = 3e-73
Identities = 191/211 (91%), Gaps = 6/211 (3%)
Strand=Plus/Plus
Query 1 ATGGCGACTCAAACAATGAAAAAGATATACAGTTG-TTTGATGATTGTAGTTTTATTTAC 59
||||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||
Sbjct 10 ATGGCGACTCAAACAATAAAAAAGATATACAG-TGTTTTGATGATTGTAGCTTTATTTAT 68
Query 60 GATAG-TGGTTTCAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGA 118
|| | ||||||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 69 AAT-GATGGTTTCAACATATGCGAGTACGATAGAAGTATGTGTTAAGCATTGTGTCCCGA 127
Query 119 ATCAATGCATGAAAGT-TTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAA 177
|||||||||||||||| || | |||| ||||||||||| |||||||||||||||||||||
Sbjct 128 ATCAATGCATGAAAGTGTT-TAAAAAAGCAACTCTTCCGTTATGTGAGAATGCTTGCAAA 186
Query 178 AAGTTTTGCAACCAAAACAAATTTTCTGATG 208
||| |||||||||| ||||||||| || |||
Sbjct 187 AAGCTTTGCAACCAGAACAAATTTGCTCATG 217
> AT5G36805.1 | Symbols: | Plant thionin family protein | chr5:14488961-14489224
REVERSE LENGTH=264
Length=264
Score = 272 bits (147), Expect = 1e-72
Identities = 221/254 (87%), Gaps = 16/254 (6%)
Strand=Plus/Plus
Query 1 ATGGCGACTCAAACAATGAAAAAGATATACAGTTG-TTTGATGATTGTAGTTTTATTTAC 59
||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||| ||
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAG-TGTTTTGATGATTGTAGTTTTATTAAC 59
Query 60 GATAG-TGGTTTCAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGA 118
||| | | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 60 GAT-GATTGTTTCAACATACGCGAGTACGGTGGAAGTATGTGTTAAGCATTGTGTCCCGA 118
Query 119 ATCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCA-AA 177
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 119 ATCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAA 178
Query 178 AAGTTTTGCAACCAAAACAAATTTTCTGATGAGAAACT-TATCGTGCATCGAAGTT-CTT 235
|| | | |||| |||||||| | ||||| || | | |||||| |||||||| ||
Sbjct 179 AACTCT-GCAATGAAAACAAA----C--ATGAGGAA-TATGTCGTGCCTCGAAGTTACT- 229
Query 236 GCGACGGATTATTC 249
|| | |||||||||
Sbjct 230 GCAATGGATTATTC 243
> AT5G36720.1 | Symbols: | Plant thionin family protein | chr5:14429661-14429924
REVERSE LENGTH=264
Length=264
Score = 272 bits (147), Expect = 1e-72
Identities = 221/254 (87%), Gaps = 16/254 (6%)
Strand=Plus/Plus
Query 1 ATGGCGACTCAAACAATGAAAAAGATATACAGTTG-TTTGATGATTGTAGTTTTATTTAC 59
||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||| ||
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAG-TGTTTTGATGATTGTAGTTTTATTAAC 59
Query 60 GATAG-TGGTTTCAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGA 118
||| | | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 60 GAT-GATTGTTTCAACATACGCGAGTACGGTGGAAGTATGTGTTAAGCATTGTGTCCCGA 118
Query 119 ATCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCA-AA 177
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 119 ATCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAA 178
Query 178 AAGTTTTGCAACCAAAACAAATTTTCTGATGAGAAACT-TATCGTGCATCGAAGTT-CTT 235
|| | | |||| |||||||| | ||||| || | | |||||| |||||||| ||
Sbjct 179 AACTCT-GCAATGAAAACAAA----C--ATGAGGAA-TATGTCGTGCCTCGAAGTTACT- 229
Query 236 GCGACGGATTATTC 249
|| | |||||||||
Sbjct 230 GCAATGGATTATTC 243
> AT3G24465.1 | Symbols: | Plant thionin family protein | chr3:8894877-8895140
REVERSE LENGTH=264
Length=264
Score = 272 bits (147), Expect = 1e-72
Identities = 221/254 (87%), Gaps = 16/254 (6%)
Strand=Plus/Plus
Query 1 ATGGCGACTCAAACAATGAAAAAGATATACAGTTG-TTTGATGATTGTAGTTTTATTTAC 59
||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGCAACTCAAACAACAAAAAAGATATACAG-TGTTTTGATGATTGTAGTTTTATTTAC 59
Query 60 GATAG-TGGTTTCAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGA 118
||| | | ||||||||||| ||||||||| |||||||||||||||| || ||| ||||||
Sbjct 60 GAT-GATTGTTTCAACATACGCGAGTACGATGGAAGTGTGTGTTAAACACTGTATCCCGA 118
Query 119 ATCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCA-AA 177
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 119 ATCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACAA 178
Query 178 AAGTTTTGCAACCAAAACAAATTTTCTGATGAGAAACT-TATCGTGCATCGAAGTT-CTT 235
|| ||| |||| |||||||| ||||||||| | |||||||| |||||| | ||
Sbjct 179 AACTTT-GCAATGAAAACAAA------GATGAGAAA-TATATCGTGCCTCGAAGCTACT- 229
Query 236 GCGACGGATTATTC 249
|||| |||||||||
Sbjct 230 GCGATGGATTATTC 243
> AT5G38378.1 | Symbols: | Plant thionin family protein | chr5:15344448-15344711
FORWARD LENGTH=264
Length=264
Score = 261 bits (141), Expect = 2e-69
Identities = 183/202 (91%), Gaps = 8/202 (4%)
Strand=Plus/Plus
Query 1 ATGGCGACTCAAACAATGAAAAAGATATACAGTTG-TTTGATGATTGTAGTTTTATTTAC 59
||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGCAACTCAAACAATAAAAAAGATATACAG-TGTTTTGATGATTGTAGTTTTATTTAC 59
Query 60 GAT-AGTGGTTTCAAC-ATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCG 117
||| | |||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 60 GATGA-TGGTTTCAACCA-ACGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCG 117
Query 118 AATCAATGCATGAAAGTTTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCA-A 176
|| |||||||||||||||||||| |||||||||||||| |||||||||| |||||||| |
Sbjct 118 AACCAATGCATGAAAGTTTCTCAGAAGGCAACTCTTCCATTATGTGAGACTGCTTGCACA 177
Query 177 AAAGTTTTGCAACCAAAACAAA 198
||| | | |||| ||||||||
Sbjct 178 AAACTCT-GCAATGAAAACAAA 198
> AT5G34828.1 | Symbols: | Plant thionin family protein | chr5:13094069-13094344
REVERSE LENGTH=276
Length=276
Score = 250 bits (135), Expect = 5e-66
Identities = 190/216 (88%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 1 ATGGCGACTCAAACAATGAAAAAGATATACAGTTG-TTTGATGATTGTAGTTTTATTTAC 59
||||||||||||||||| |||||||||||||| || |||||| ||||||| |||||||||
Sbjct 1 ATGGCGACTCAAACAATAAAAAAGATATACAG-TGTTTTGATCATTGTAGCTTTATTTAC 59
Query 60 GATAG-TGGTTTCAACATATGCGAGTACGGTGGAAGTGTGTGTTAAGCATTGTGTCCCGA 118
||| | |||||||||||| |||||||||| | ||| | |||||||| ||||||||||| |
Sbjct 60 GAT-GATGGTTTCAACATTTGCGAGTACGATAGAAATATGTGTTAAACATTGTGTCCCAA 118
Query 119 ATCAATGCATGAAAGT-TTCTCAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAA 177
|||| ||||| ||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATCAGTGCATAAAAGTGTT-TAAAAAGGCAACTCTTCCTTTATGTGAGAATGCTTGCAAA 177
Query 178 AAGTTTTGCAACCAAAACAAATTTTCTGATGAGAAA 213
|| | |||||||| ||||||||| || ||| ||||
Sbjct 178 AAACTCTGCAACCAGAACAAATTTGCTCATGTGAAA 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12516669501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5