BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907627
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58270.1 | Symbols: ZW9 | TRAF-like family protein | chr1:21... 1146 0.0
> AT1G58270.1 | Symbols: ZW9 | TRAF-like family protein | chr1:21612116-21614117
REVERSE LENGTH=1497
Length=1497
Score = 1146 bits (620), Expect = 0.0
Identities = 883/1003 (88%), Gaps = 45/1003 (4%)
Strand=Plus/Plus
Query 1 ATGTTTTCAGATGAAAAGAAAAGCAAAAATTATGGTTCAATCTTTTTGTACTGCTTCTTC 60
|||| |||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 29 ATGTATTCAGAGGAAAAGAAAAGCAGAAATTATGGTTCAATCTTTGTCTACTGCTTCTTC 88
Query 61 TGTTTCGTACTCATTGTGGAAGTTACAAGATTCGCAAAACCTTATTA-CAACCTTCAAAA 119
|||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||
Sbjct 89 TGTTTCGTACTCATTGTGGAGGTTGCAAGATTCGCAAAACCTTA-TATCAACCTTCAAAA 147
Query 120 CCTAATTGAGACAGAAGCAGTAGTAGAAGAAGGTTTCTTGGCGGT-GGAAGACTCAGGGA 178
|||||||||||| |||||||||||||||||||||||| ||||||| || | |||||||||
Sbjct 148 CCTAATTGAGACGGAAGCAGTAGTAGAAGAAGGTTTCATGGCGGTGGGGA-ACTCAGGGA 206
Query 179 AACTTCCATGTCGCTTGTTAAGTCGTCCCTCTGTCTCTGTTCCTAG-TCAGGATCAACAG 237
| ||||| ||| ||| || || | | ||||| |||||||| | | ||| ||| |||||
Sbjct 207 ATCTTCCGTGTGGCTCGTCAAAACCTAGCTCTGCCTCTGTTCGT-GCTCATGATGAACAG 265
Query 238 AAGCTCTCGCAAGCAGTAACGCA-AGAAACAAGAACTCGTCCTCCAAATTCATACTGTGT 296
|||||||||||||||||||| | ||| || |||||||||||||||||||| ||||| ||
Sbjct 266 AAGCTCTCGCAAGCAGTAAC-AACAGATACGAGAACTCGTCCTCCAAATTCGTACTGCGT 324
Query 297 GAAGTTCCAGTCTTTTATCACTATGGCAAAACAGGTCAAAGAAAATGGTGGCAAGTATGA 356
|||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 325 GAAGTTCCAGTCTTTTGTCACTATGGCAAAGCAGGTCAAAGAAAACGGTGGCAAGTATGA 384
Query 357 GTCACGTCCATTCTCCGTTGGTGGATACAACT-G--G---------T----A--C----A 394
||||||||| |||||||| ||||||||||| | | | | | | |
Sbjct 385 GTCACGTCCTTTCTCCGTCGGTGGATACAATTGGACGCTCCTAATCTACCCAGTCATATA 444
Query 395 CATTCCATCGGGCTCGGGTGGATAC--ATCGCTTTACTTAAGAATCGATAACTCAAGCCT 452
||||||| ||| ||||||||| ||| ||| ||||| ||||| ||||||||||||||||
Sbjct 445 CATTCCAACGGACTCGGGTGGGTACGTTTCGATTTACGTAAGAGTCGATAACTCAAGCCT 504
Query 453 CATCACCAATCCGAAAGATGTGTACGCAGATATCACATTCCTCGCTTATAAAAGCAGTAC 512
|||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 505 CATCACCAATCCAAAAGATGTGTATGCAGAGATCACATTCCTCGCTTATAAAAGCAGTAC 564
Query 513 AGACAAGTACC-AATCATA-CCAAGAGACTGATGCGCAGCGATTTCATTTGTTTAGACAA 570
||||||||||| ||| | | ||| |||||||| || ||||||||||||||||||| ||||
Sbjct 565 AGACAAGTACCAAAT-A-AGCCAGGAGACTGAGGCCCAGCGATTTCATTTGTTTAAACAA 622
Query 571 CAGTGGGGACAAATAAC-CTTTCTTCCGA-TTGCATATTTTGAAAATCCGGGATATGGAT 628
|||||||||| | || ||||| || | || | |||||||||||||||| ||||||||
Sbjct 623 CAGTGGGGAC-TTTTACAATTTCTACCAATTTAC-TATTTTGAAAATCCGGCATATGGAT 680
Query 629 ACTCTTTCGAGGGCGGAAGCGTTGTGTTTGGCGTTGACATCAACATTGTTAAACCCTTTG 688
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 ACTTTTTCGAGGGCGAAAGCGTTGTGTTTGGCGTTGACATCAACATTGTTAAACCCTTTG 740
Query 689 AAAATTGGGAAGTTTTCTCTAACGAACAAAACATTCGTGACCCTATTTTCGAATGGAGAC 748
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 741 AAAATTGGGAAGTGTTCTCTAATGAACAAAACATTCGTGACCCTATTTTCGAATGGAGAC 800
Query 749 TCACCAAATTCTCTACAC-TCTTTAAAGACTCTTACACTTCTGGTTCCTTTTCTTCCGGA 807
|||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||
Sbjct 801 TCACCAAATTCTCTACACGT-TTTCTTGACTCTTACACTTCTGATTCCTTTTCTTCCGGA 859
Query 808 GGAAGAAACTGGGCATTGAAATTGTATCCAAATGGAGTTGGAAATGCAACGGGTAATTCG 867
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 860 GGAAGAAACTGGGCATTGAAAGTGTATCCAAATGGAGTTGGAAATGCTACGGGTAATTCG 919
Query 868 TTGTCACTCTATTTGTTGAATGA---GTCAAATGATAAGGGTTACGTGGAAGCCAAGTTA 924
||||||||||||||||||| ||| |||||||||||||||||| |||||||| ||||||
Sbjct 920 TTGTCACTCTATTTGTTGAGTGATCAGTCAAATGATAAGGGTTATGTGGAAGCTAAGTTA 979
Query 925 CAAATTATTGACCAGAACCAATCCAACCATTTCGTGAAAAAAG 967
| | |||||||||||| |||||||||| |||||| ||||||||
Sbjct 980 CGAGTTATTGACCAGATCCAATCCAACAATTTCGAGAAAAAAG 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5