BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907634

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G58280.2 | Symbols:  | Phosphoglycerate mutase family protei...   289    7e-78


> AT1G58280.2 | Symbols:  | Phosphoglycerate mutase family protein 
| chr1:21620331-21622519 REVERSE LENGTH=1249
Length=1249

 Score =  289 bits (156),  Expect = 7e-78
 Identities = 178/189 (94%), Gaps = 0/189 (0%)
 Strand=Plus/Plus

Query  1    GTGAGACATGCTCAAGGGATTCACAATGTTGAAGGAGAGAAGAACAATGAGGCTTACTTA  60
            ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct  238  GTGAGACATGCTCAAGGGATTCACAATGTTGAAGGAGAGAAGAACCATAAGGCTTACTTA  297

Query  61   TCTGAGGATCTCTTTGATGCACATCTTACACCTCTTGGATGGCAACAAGTTGATAATTTA  120
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  TCTGAGGATCTATTTGATGCACATCTTACACCTCTTGGATGGCAACAAGTTGATAATTTA  357

Query  121  CACAAGCATGTTAAGGCAAGTGGAATTTTCAATAGAATTGAGTTAGTCGTTGTGTCGCCT  180
            |||||||||||||| |||||||| |||| ||||||||||||||| || || || || |||
Sbjct  358  CACAAGCATGTTAATGCAAGTGGTATTTCCAATAGAATTGAGTTGGTAGTCGTATCTCCT  417

Query  181  CTGCTCAGG  189
            |||||||||
Sbjct  418  CTGCTCAGG  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8500928319


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5