BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907635
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58280.2 | Symbols: | Phosphoglycerate mutase family protei... 1437 0.0
> AT1G58280.2 | Symbols: | Phosphoglycerate mutase family protein
| chr1:21620331-21622519 REVERSE LENGTH=1249
Length=1249
Score = 1437 bits (778), Expect = 0.0
Identities = 947/1027 (92%), Gaps = 18/1027 (2%)
Strand=Plus/Plus
Query 1 ATGAGTCACCAATCAATGACCTCAAATCTTTCATTTTACATttcctctgtttctcctctt 60
|||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 52 ATGATTCACCAATCAATGACCTCAAATCTTTCATTTTACATTTCTTCTGTGTCTCATCTT 111
Query 61 tcctctcctcttccatcgattcgtcgcctctctctccGTTGTTGCAGCTCTCTTCCTTCT 120
|||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| ||
Sbjct 112 TCCTCTCCTCTTCCATCGCTTAGTCGCCTCTCTCTTCGTTGTTGCAGCTCTCTTCCTGCT 171
Query 121 CACGATATGGAGGCTAAACCAAGTCAAGGCCTTTACCCACTTCACCGTTGCAAAACCATA 180
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 CACGATATGGAGACAAAACCAAGTCAAGGCCTTTACCCACTTCACCGTTGCAAAACCATA 231
Query 181 CATCTGGTGAGACATGCTCAAGG-AGTTCACAATGTTGAAGGAGAGAAGAACCATGAGGC 239
||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 232 CATCTGGTGAGACATGCTCAAGGGA-TTCACAATGTTGAAGGAGAGAAGAACCATAAGGC 290
Query 240 TTACTTATCTGAGGATCTCTTTGATGCACATCTTACCCCTCTTGGATGGCAACAAGTTGA 299
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 291 TTACTTATCTGAGGATCTATTTGATGCACATCTTACACCTCTTGGATGGCAACAAGTTGA 350
Query 300 TAATTTACTCAAGCATGTTAAGGCAAGTGGGATTTCCAATAGAATTGAGTTAGTCGTTGT 359
|||||||| |||||||||||| |||||||| |||||||||||||||||||| || || ||
Sbjct 351 TAATTTACACAAGCATGTTAATGCAAGTGGTATTTCCAATAGAATTGAGTTGGTAGTCGT 410
Query 360 GTCGCCTCTGCTCAGGACTTTGCAAACTGCGGTCGGAACTTTTG-TCGGGGAAGGTTACA 418
|| ||||||||||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 411 ATCTCCTCTGCTCAGGACTTTGCAAACAGCGGTCGGAACTTTTGGT-GGGGAAGGTTACA 469
Query 419 AAGATGGCCTTAATGCACCTCTGCTTATGACCTCAGGTGCGGGAAACAGCGATCGTCCTG 478
||||||| | ||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 470 AAGATGGTGTAAATACACCTCTGCTTATGACCGCAGGTGCTGGAAACAGCGATCGTCCTG 529
Query 479 CTATATCAAGCTTAAATTGTCCACCGTTCATTGCGGTTGAATCCTGTCGAGAACATTTGG 538
|||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 530 CTATATCAAGGTTAAATCGTCCACCGTTCATTGCGGTTGAATCCTGCCGAGAACATTTGG 589
Query 539 TATGTTTACTTATCCACCTTTTGCATAATTGGCATTTGCTTAAGA-GTAA-CTTTTTTGA 596
||||||||||| || ||||||||||| |||||||||| ||| ||| | || ||||| |
Sbjct 590 TATGTTTACTTTTCTACCTTTTGCATGATTGGCATTTTCTTGAGATGAAAACTTTT--GC 647
Query 597 AATGTTCTTGTTTTTGGTTCAGGGTGTTCATCCTTGTGACCGAAGACGTAATATCACCAA 656
|||||||||| | ||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 648 AATGTTCTTG-----G-TTCAGGGTGTTCATCCTTGTGACAGAAGAAGCAATATCACCAA 701
Query 657 GTACCGCGAAATGTTCCCTGCAATTGATTTTTCATTGATAGAAACTGATGAAGATGTCTT 716
|||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 702 GTACCGCGAATTATTCCCTGCGATTGATTTTTCATTGATAGAAACTGATGAAGATGTCTT 761
Query 717 GTGGAAGCCTGACATTAGAGAGGAGGACCAAGATATTGCGGCCAGAGGCGTGAAGTTCTT 776
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 762 GTGGAAGCCTGACATTAGAGAGGAGGATAAAGATATTGCGACCAGAGGCGTGAAGTTCTT 821
Query 777 TAACTGGTTGAGTACAAGGAAAGAAAAGGAGATTGCGGTTGTTACTCATAGTGGGTTCTT 836
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 822 TAACTGGTTGAGTACAAGGAAAGAAAAAGAGATTGCGGTTGTAACTCATAGTGGGTTCTT 881
Query 837 GTATCATACATTAAACTCATTTGGAAACGATTGTGATCCATCTACGAAAAACGAGATTTC 896
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 882 GTATCAAACATTAAACTCATTTGGAAACGATTGTGATCCATCTGTGAAAAACGAGATTTC 941
Query 897 TTCAAAATTTGCCAACTGTGAACTCCGTTCGGTTGTTCTTGTAGATAAATGCATGAACAG 956
| |||||||| |||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 942 TAAAAAATTTGTCAACTGTGAACTCCGTTCATTTGTTCTTGTAGATAAATGCATGAGCAG 1001
Query 957 TTCGGATCCTCCAGTGAACAACTATCCCGGAAACA-TACCTGCCGGAGAAGAT-CTTCCT 1014
||||||||||||| ||| |||||||||||||| || ||| | ||||||||||| |||| |
Sbjct 1002 TTCGGATCCTCCAATGACCAACTATCCCGGAA-CAATACTTACCGGAGAAGATGCTTC-T 1059
Query 1015 AGTGATA 1021
|||||||
Sbjct 1060 AGTGATA 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5