BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907642
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT1G58310.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1035 0.0
AT4G14103.2 | Symbols: | F-box/RNI-like superfamily protein | ... 477 9e-134
AT4G14096.1 | Symbols: | F-box/RNI-like superfamily protein | ... 449 2e-125
> AT1G58310.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:21631947-21633642 FORWARD LENGTH=1518
Length=1518
Score = 1035 bits (560), Expect = 0.0
Identities = 738/821 (90%), Gaps = 23/821 (3%)
Strand=Plus/Plus
Query 45 TCTTGGAAAAAAGAATCCTGTTA-TTAGTGGTGAAGATTATTTGGAAATGATTAATGAAA 103
||||||||||| |||||||| | |||||||||| ||||||||| |||||||||||||||
Sbjct 177 TCTTGGAAAAAGGAATCCTG-CAGTTAGTGGTGAGGATTATTTGAAAATGATTAATGAAA 235
Query 104 GAAATAATCAGCTTTCTACAAGTTTTATGGCTTTTGTGGATCATGTGTTG-GCATTGCAA 162
||| | |||||||||| ||||||||||||| |||||| ||||| |||||| | |||||||
Sbjct 236 GAAGTGATCAGCTTTCGACAAGTTTTATGGATTTTGTAGATCAAGTGTTGAG-ATTGCAA 294
Query 163 GGCAATTCTCCTCTACACAAGTTCTCTCTAAAGTTCGGAGACGGTGTTGTTGATCGATTC 222
| ||||||||||||||||||||||||||||||| || |||| || ||||||| | ||
Sbjct 295 GACAATTCTCCTCTACACAAGTTCTCTCTAAAGATCAGAGA--TTG-TGTTGATATAGTC 351
Query 223 CGTGTCATTCGTTGGATACTCAAGGTGTTGGAACGCGGAGTATCCGATCTTGAACTAGAC 282
||| ||||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 352 CGTATCATTTGTTGGATACTCAAGGTTTTGGAACGCGGTGTATCTGATCTTGAACTAGAC 411
Query 283 ATGCATTTGAAATGGAAATCTTCACTTCCTTCAAAGATCTTTTTGAGCGAGACACTCGTT 342
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 412 ATGCATTTGAAATGGAAATCTTCACTTCCTTCAAAGATCTTTTTGAGTGAGACACTCGTT 471
Query 343 AGGCTGAAACTAAGTGTGGATCGTGGCCCGAGAATTGATGTTGATGATGTTCATCTTCCT 402
|||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 472 AGGCTGAAGCTAAGTGTGGAACGTGGCCCGTTCATTGATGTTGAAGATGTTCATCTTCCT 531
Query 403 AAGCTTAAGACTCTCCATATTGAGTCAGTCAAATTTGAACAGCATGGTATTGGGCTTAAC 462
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 532 AAGCTTAAGACTCTCCATATTGTGTCAGTCAAATTTGAAAAGCATGGTATTGGGCTTAAC 591
Query 463 AAGCTTCTTTCTGGTTGTCACATACTTGAGGAGTTAATTCTGGAATATATATCTTGGTGC 522
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 592 AAGCTTCTTTCTGGTTGTCACATACTTGAGGAGTTAAATCTTGAATATATATCTTGGTGC 651
Query 523 CTATGGGAATTTGTCTCTGTGTCTAGCACAACTCTCAAGAGACTAACGTTTTGCGGGGAA 582
|||||||| ||||||||||||||| ||||||||||||||| ||||| ||||| ||||||
Sbjct 652 CTATGGGATTTTGTCTCTGTGTCTCTCACAACTCTCAAGAGGCTAACTTTTTGTGGGGAA 711
Query 583 CTAATGCAAGATGAGAATCCGATTAGTGTGT-TGTTAGATACTCCGAATCTTGTCTACTT 641
||||||||||||||||||| || ||||||| | ||| |||||||||| |||||||||||
Sbjct 712 GTAATGCAAGATGAGAATCCAATAAGTGTGTCTTTTA-ATACTCCGAACCTTGTCTACTT 770
Query 642 GAAGTTTACTGATGTTATTGCGGACGAGTATTCAAAAGTGAACTTCGATTCGCTTGTTGA 701
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 771 GATGTTTACTGATGCTATTGCGGACGAGTATTCAACAGTGAACTTCGATTCGCTTGTTGA 830
Query 702 AGCCCATATCAATCTTCAGATGTCAGAAGATCAGATGGAAG-AGGCACGGTTTTCAAATT 760
||| |||||||||||||||||||||||||||||| | || | || |||| |||||| |||
Sbjct 831 AGCTCATATCAATCTTCAGATGTCAGAAGATCAGGTTGA-GCAGACACGTTTTTCAGATT 889
Query 761 CTGAAGGTAAT--------CTG---G-TCGCTAATGCAACAGATTTTATAATGGGAATAT 808
||||||||||| ||| | | |||||||||||||| || |||||||||||||
Sbjct 890 CTGAAGGTAATATGGAAGGCTGTATGGTAGCTAATGCAACAGAATTAATAATGGGAATAT 949
Query 809 GCAATGTGAAGATTCTTTCTCTAGCAGCTTATACTCTTGAG 849
||||||||||||| |||| |||| ||| |||||||||||||
Sbjct 950 GCAATGTGAAGATCCTTTATCTATCAGTTTATACTCTTGAG 990
Score = 287 bits (155), Expect = 2e-76
Identities = 187/203 (92%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 847 GAGATAGAGAAGAAGATAGACCAAGTCAAGCACTTTCTAGAGACGATGCCGTATGTTGAG 906
||||||||||||| |||||||||||||||||| |||||||||| ||| ||| || |||||
Sbjct 1294 GAGATAGAGAAGAGGATAGACCAAGTCAAGCATTTTCTAGAGAAGATACCGGATATTGAG 1353
Query 907 CAACTGATATTACACTACAACACACCAATTGATGAGGATGTGATTGAAGTTTACCAGCAA 966
||||||||||||||||| || |||||| ||||||| ||||||||| ||||||||||||||
Sbjct 1354 CAACTGATATTACACTATAATACACCAGTTGATGAAGATGTGATTAAAGTTTACCAGCAA 1413
Query 967 CTTCAGAGGCATCCTAAAGTAGCTTCATCCAAGTGCAAACTCCAACTAATCTCTGATAAC 1026
|||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1414 CTTCGGAGGCATCCTAAAGTAGCTTCATCCAAGTGCAAACTGCAACTTATCTCTGATAAC 1473
Query 1027 CTCAGCTTGTCATCTCAAGACTG 1049
|||||||| |||||| |||||||
Sbjct 1474 CTCAGCTTATCATCTAAAGACTG 1496
> AT4G14103.2 | Symbols: | F-box/RNI-like superfamily protein
| chr4:8126915-8128833 FORWARD LENGTH=1608
Length=1608
Score = 477 bits (258), Expect = 9e-134
Identities = 501/615 (81%), Gaps = 30/615 (5%)
Strand=Plus/Plus
Query 116 TTTCTACAAGTTTTATGGCTTTTGTGGATCA-TGTGTTGGCATTGCAAGGCAATTCTCCT 174
|||||||||||||||||| |||||||||| | |||||||| |||||||| |||||||||
Sbjct 230 TTTCTACAAGTTTTATGGATTTTGTGGAT-AGAGTGTTGGCTTTGCAAGGTAATTCTCCT 288
Query 175 CTACACAAGTTCTCTCTAAAG-TTCGGAGACGGTGTTGTTGATCGATTCCGTGTCATTCG 233
||||||||||||||||||||| || ||||| || ||| ||| | ||||| ||||||
Sbjct 289 CTACACAAGTTCTCTCTAAAGATT-GGAGATGGCATTG---ATCCAGTCCGTATCATTCC 344
Query 234 TTGGATAC-TCAAGGTGTTGGAACGCGGAGTATCCGATCTTGAACTAGACATGCATTTGA 292
||||||| | || ||||||||||| || |||||||||||||| ||| || || |||||
Sbjct 345 TTGGATAAAT-AATGTGTTGGAACGGGGTGTATCCGATCTTGATCTACACCTGAATTTGG 403
Query 293 AATG-GAAATCTTCA-CTTCCTTCA-AAGATCTTTTTGAGCGAGACACTCGTTAGGCTGA 349
||| ||| | ||| ||||||||| ||| ||| ||| || ||||||| ||| ||||||
Sbjct 404 AATCAGAA-T-TTCTGCTTCCTTCACAAG-TCTACTTGTGCAAGACACTGGTTTGGCTGA 460
Query 350 AACTAAG-TGTGGA-TCGTGGCCCGA-GAATTGATGTTGATGATGTTCATCTTCCTAAGC 406
| ||||| | ||| | | ||| | || |||||||||| ||||||||||| || ||||
Sbjct 461 AGCTAAGGTTTGGGCTA-TATCCC-ACGA-TTGATGTTGAAGATGTTCATCTCCCAAAGC 517
Query 407 TTAAGACTCTCCATATTGAGTCAGTCAAATTTGAACAGCATGGTATTGGGCTTAACAAGC 466
||||||| || |||||||| || | | |||||| |||||||| ||||||||| |||||
Sbjct 518 TTAAGACGCTTTATATTGAGGCAACCCATTTTGAAGAGCATGGTGTTGGGCTTACCAAGC 577
Query 467 TTCTTTCTGGTTGTCACATACTTGAGGAGTTAATTCTGGAAT-ATATATCTTGGTGCCTA 525
||||||||||||||| ||| |||||||| ||| |||| || | |||||||||||| | |
Sbjct 578 TTCTTTCTGGTTGTCCCATGCTTGAGGATTTAGTTCTTGA-TGATATATCTTGGTTCATT 636
Query 526 TGGGAATTTGTCTCTGTGTCTAG-CACAACTCTCAAGAGACTAACGTTTTGCGGGGAACT 584
||||| |||| ||| |||||| | | ||||||||||||| |||| |||| || || ||
Sbjct 637 TGGGATTTTGCCTCGGTGTCT-GTCCCAACTCTCAAGAGGCTAAGGTTTAGCTGGCAAG- 694
Query 585 AATGCAAGATGAGAATCCGATTAGTGTGTTGTTAGATACTCCGAATCTTGTCTACTTGAA 644
| || ||||||| ||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 695 A--GCGAGATGAGTTTCCAAAGAGTGTGTTGTTAGATACTCCGAATCTTGTATACTTGAA 752
Query 645 GTTTACTGATGTTATTGC-GGACGAGTATTCAAAAGTGAACTTCGATTCGCTTGTTGAAG 703
|||||||||| | |||| || | ||||| | |||||||| || ||||| ||||||||||
Sbjct 753 GTTTACTGATACTGTTGCAGG-CAAGTATCCGAAAGTGAATTTGGATTCCCTTGTTGAAG 811
Query 704 CCCATATCAATCTTC 718
| |||||| ||||||
Sbjct 812 CTCATATCGATCTTC 826
Score = 137 bits (74), Expect = 2e-31
Identities = 163/204 (80%), Gaps = 13/204 (6%)
Strand=Plus/Plus
Query 846 TGAGATAGAGAAGAAGATAGACCAAG-TCAAGCACTTTC-TAGAGACGATGCCGTATGTT 903
||| || |||||| ||| ||| | || ||||| | |||| | ||||| |||||| || ||
Sbjct 1134 TGACATGGAGAAGCAGAGAGAGC-AGATCAAGTA-TTTCTTGGAGACAATGCCGAATCTT 1191
Query 904 GAGCAA-CTGATATTACACTACAACACACCAATTGATGAGGATGTGATTGAAGTTTACCA 962
||| || |||| || ||||||| ||||||| || ||| ||||| | |||||||| | |
Sbjct 1192 GAG-AAGATGATTTTGTACTACAATACACCAAGTGTTGAAGATGTAACTGAAGTTT-CAA 1249
Query 963 G-CAACTTCAGAGGC-A--TCCTAAAGTAGCTTCATCCA-AGTGCAAACTCCAACTAATC 1017
| | ||||||||||| | | |||||||||||||||| | | || | |||||||||||
Sbjct 1250 GCCGACTTCAGAGGCTAGTTTCTAAAGTAGCTTCATCGACA-TGTATTGTCCAACTAATC 1308
Query 1018 TCTGATAACCTCAGCTTGTCATCT 1041
||||||||||||||||||||||||
Sbjct 1309 TCTGATAACCTCAGCTTGTCATCT 1332
> AT4G14096.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:8124415-8126514 FORWARD LENGTH=1825
Length=1825
Score = 449 bits (243), Expect = 2e-125
Identities = 501/620 (81%), Gaps = 39/620 (6%)
Strand=Plus/Plus
Query 116 TTTCTACAAGTTTTATGGCTTTTGTGGATCA-TGTGTTGGCATTGCAAGGCAATTCTCC- 173
||||| |||||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 303 TTTCTTCAAGTTTTATGGATTTTGTGGAT-AGAGTGTTGGCATTGCAAGGCAATTCTCCA 361
Query 174 TCTACACAAGTTCTCTCTAAAGTTCGGAGACGGTGTTGTTGATCGATTCCGTGTCATTCG 233
| |||| ||||||||||||||| ||||||| || ||||| | | |||| ||||||
Sbjct 362 T-TACATAAGTTCTCTCTAAAGATCGGAGA---TGGCGTTGAACCAGACCGTATCATTCC 417
Query 234 TTGGAT-ACTCAAGGTGTTGGAACGCGGAGTATCCGATCTTGAACTAGACATGCAT-TTG 291
|||||| | | || |||||||||||||| |||||||||||||| ||| || || || | |
Sbjct 418 TTGGATAAAT-AATGTGTTGGAACGCGGTGTATCCGATCTTGATCTACACGTGTATATGG 476
Query 292 AAATGGAAATCTT-CACTTCCTTCAAAGATCTTTTTGAGCGAGACACTCGTTAGGCTGAA 350
||| || ||| || |||||||| |||| || |||||| ||||||| |||||||||||
Sbjct 477 AAACGG-AAT-TTGTGTTTCCTTCAGAGATGTTCTTGAGCAAGACACTGGTTAGGCTGAA 534
Query 351 ACTAAGTG-TGGATCGTGGCCCGAGAATTGATGTTGATGATGTTCATCTTCCTAAGCTTA 409
|||| || | ||| | | | | | || |||| |||||| |||| || |||||||
Sbjct 535 GCTAA-TGCTATATCCT--CTCTTGGA---AT-TTGAAGATGTTTATCTCCCGAAGCTTA 587
Query 410 AGACTCTCCATATTGAGTCAGT-CAAATTTGAACAGCATGGTATTGGGCTTAACAAGCTT 468
|||| || ||||||| ||| | | | |||||| || ||||||||||||||| |||||||
Sbjct 588 AGACGCTTTATATTGACTCA-TGCTATTTTGAAAAGTATGGTATTGGGCTTACCAAGCTT 646
Query 469 CTTTCTGGTTGTCACATACTTGAGGAGTTAATTCTGGAAT-ATATATCTTGGTGC-CTAT 526
||||||||||||| |||||||||||| ||| |||| | || ||||| |||||||| || |
Sbjct 647 CTTTCTGGTTGTCCCATACTTGAGGATTTAGTTCTTG-ATGATATACCTTGGTGCACT-T 704
Query 527 GGGAATTTGTCTCTGTGTCTAG-CACAACTCTCAAGAGACTAACGTTTTGCGGGGAACTA 585
|||| |||| ||| |||||| | | ||||||||||||||||||||||| || | | |
Sbjct 705 GGGATTTTGCCTCGGTGTCT-GTCCCAACTCTCAAGAGACTAACGTTTAGC-ACG--C-A 759
Query 586 A-TGCAAGATGAGAATCCGATTAGTGTGT-TGTTAGATACTCCGAATCTTGTCTACTTGA 643
| ||| ||||||| ||| | ||||||| | || |||||||||||||||||||||||||
Sbjct 760 AGTGCGAGATGAGTTTCCAAAGAGTGTGTCTATT-GATACTCCGAATCTTGTCTACTTGA 818
Query 644 AGTTTACTGATGTTATTGC-GGACGAGTATTCAAAAGTGAACTTCGATTCGCTTGTTGAA 702
|||||||||| | |||| || | ||||| | |||||||| ||||||||||||||||||
Sbjct 819 AGTTTACTGACACTGTTGCAGG-CAAGTATCCGAAAGTGAATTTCGATTCGCTTGTTGAA 877
Query 703 GCCCATATCAATCTTCAGAT 722
|| |||||| ||||| ||||
Sbjct 878 GCTCATATCGATCTT-AGAT 896
Score = 132 bits (71), Expect = 8e-30
Identities = 161/203 (79%), Gaps = 11/203 (5%)
Strand=Plus/Plus
Query 846 TGAGATAGAGAAGAAGATAGACCAAG-TCAAGCACTTTC-TAGAGACGATGCCGTATGTT 903
||| || |||||| ||| ||| | || ||||| | |||| | ||||| |||||| || ||
Sbjct 1282 TGACATGGAGAAGCAGAGAGAGC-AGATCAAGTA-TTTCTTGGAGACAATGCCGAATCTT 1339
Query 904 GAGCAA-CTGATATTACACTACAACACACCAATTGATGAGGATGTGATTGAAGTTTACCA 962
||| || |||| || ||||||| ||| ||| || ||| ||||| | |||||||| | |
Sbjct 1340 GAG-AAGATGATTTTGTACTACAATACAACAAGTGTTGAAGATGTAACTGAAGTTT-CAA 1397
Query 963 G-CAACTTCAGAGGC-A--TCCTAAAGTAGCTTCATCCAAGTGCAAACTCCAACTAATCT 1018
| | |||||||||| | | ||||| |||||||||| | ||||| ||||||||||||
Sbjct 1398 GCCGGCTTCAGAGGCTAGTTTCTAAATTAGCTTCATCGACGTGCATTGTCCAACTAATCT 1457
Query 1019 CTGATAACCTCAGCTTGTCATCT 1041
|||||||||||||||||||||||
Sbjct 1458 CTGATAACCTCAGCTTGTCATCT 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5