BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg907642 Length=1050 Score E Sequences producing significant alignments: (Bits) Value AT1G58310.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1035 0.0 AT4G14103.2 | Symbols: | F-box/RNI-like superfamily protein | ... 477 9e-134 AT4G14096.1 | Symbols: | F-box/RNI-like superfamily protein | ... 449 2e-125 > AT1G58310.1 | Symbols: | F-box/RNI-like superfamily protein | chr1:21631947-21633642 FORWARD LENGTH=1518 Length=1518 Score = 1035 bits (560), Expect = 0.0 Identities = 738/821 (90%), Gaps = 23/821 (3%) Strand=Plus/Plus Query 45 TCTTGGAAAAAAGAATCCTGTTA-TTAGTGGTGAAGATTATTTGGAAATGATTAATGAAA 103 ||||||||||| |||||||| | |||||||||| ||||||||| ||||||||||||||| Sbjct 177 TCTTGGAAAAAGGAATCCTG-CAGTTAGTGGTGAGGATTATTTGAAAATGATTAATGAAA 235 Query 104 GAAATAATCAGCTTTCTACAAGTTTTATGGCTTTTGTGGATCATGTGTTG-GCATTGCAA 162 ||| | |||||||||| ||||||||||||| |||||| ||||| |||||| | ||||||| Sbjct 236 GAAGTGATCAGCTTTCGACAAGTTTTATGGATTTTGTAGATCAAGTGTTGAG-ATTGCAA 294 Query 163 GGCAATTCTCCTCTACACAAGTTCTCTCTAAAGTTCGGAGACGGTGTTGTTGATCGATTC 222 | ||||||||||||||||||||||||||||||| || |||| || ||||||| | || Sbjct 295 GACAATTCTCCTCTACACAAGTTCTCTCTAAAGATCAGAGA--TTG-TGTTGATATAGTC 351 Query 223 CGTGTCATTCGTTGGATACTCAAGGTGTTGGAACGCGGAGTATCCGATCTTGAACTAGAC 282 ||| ||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 352 CGTATCATTTGTTGGATACTCAAGGTTTTGGAACGCGGTGTATCTGATCTTGAACTAGAC 411 Query 283 ATGCATTTGAAATGGAAATCTTCACTTCCTTCAAAGATCTTTTTGAGCGAGACACTCGTT 342 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 412 ATGCATTTGAAATGGAAATCTTCACTTCCTTCAAAGATCTTTTTGAGTGAGACACTCGTT 471 Query 343 AGGCTGAAACTAAGTGTGGATCGTGGCCCGAGAATTGATGTTGATGATGTTCATCTTCCT 402 |||||||| ||||||||||| ||||||||| ||||||||||| ||||||||||||||| Sbjct 472 AGGCTGAAGCTAAGTGTGGAACGTGGCCCGTTCATTGATGTTGAAGATGTTCATCTTCCT 531 Query 403 AAGCTTAAGACTCTCCATATTGAGTCAGTCAAATTTGAACAGCATGGTATTGGGCTTAAC 462 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 532 AAGCTTAAGACTCTCCATATTGTGTCAGTCAAATTTGAAAAGCATGGTATTGGGCTTAAC 591 Query 463 AAGCTTCTTTCTGGTTGTCACATACTTGAGGAGTTAATTCTGGAATATATATCTTGGTGC 522 ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 592 AAGCTTCTTTCTGGTTGTCACATACTTGAGGAGTTAAATCTTGAATATATATCTTGGTGC 651 Query 523 CTATGGGAATTTGTCTCTGTGTCTAGCACAACTCTCAAGAGACTAACGTTTTGCGGGGAA 582 |||||||| ||||||||||||||| ||||||||||||||| ||||| ||||| |||||| Sbjct 652 CTATGGGATTTTGTCTCTGTGTCTCTCACAACTCTCAAGAGGCTAACTTTTTGTGGGGAA 711 Query 583 CTAATGCAAGATGAGAATCCGATTAGTGTGT-TGTTAGATACTCCGAATCTTGTCTACTT 641 ||||||||||||||||||| || ||||||| | ||| |||||||||| ||||||||||| Sbjct 712 GTAATGCAAGATGAGAATCCAATAAGTGTGTCTTTTA-ATACTCCGAACCTTGTCTACTT 770 Query 642 GAAGTTTACTGATGTTATTGCGGACGAGTATTCAAAAGTGAACTTCGATTCGCTTGTTGA 701 || ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 771 GATGTTTACTGATGCTATTGCGGACGAGTATTCAACAGTGAACTTCGATTCGCTTGTTGA 830 Query 702 AGCCCATATCAATCTTCAGATGTCAGAAGATCAGATGGAAG-AGGCACGGTTTTCAAATT 760 ||| |||||||||||||||||||||||||||||| | || | || |||| |||||| ||| Sbjct 831 AGCTCATATCAATCTTCAGATGTCAGAAGATCAGGTTGA-GCAGACACGTTTTTCAGATT 889 Query 761 CTGAAGGTAAT--------CTG---G-TCGCTAATGCAACAGATTTTATAATGGGAATAT 808 ||||||||||| ||| | | |||||||||||||| || ||||||||||||| Sbjct 890 CTGAAGGTAATATGGAAGGCTGTATGGTAGCTAATGCAACAGAATTAATAATGGGAATAT 949 Query 809 GCAATGTGAAGATTCTTTCTCTAGCAGCTTATACTCTTGAG 849 ||||||||||||| |||| |||| ||| ||||||||||||| Sbjct 950 GCAATGTGAAGATCCTTTATCTATCAGTTTATACTCTTGAG 990 Score = 287 bits (155), Expect = 2e-76 Identities = 187/203 (92%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 847 GAGATAGAGAAGAAGATAGACCAAGTCAAGCACTTTCTAGAGACGATGCCGTATGTTGAG 906 ||||||||||||| |||||||||||||||||| |||||||||| ||| ||| || ||||| Sbjct 1294 GAGATAGAGAAGAGGATAGACCAAGTCAAGCATTTTCTAGAGAAGATACCGGATATTGAG 1353 Query 907 CAACTGATATTACACTACAACACACCAATTGATGAGGATGTGATTGAAGTTTACCAGCAA 966 ||||||||||||||||| || |||||| ||||||| ||||||||| |||||||||||||| Sbjct 1354 CAACTGATATTACACTATAATACACCAGTTGATGAAGATGTGATTAAAGTTTACCAGCAA 1413 Query 967 CTTCAGAGGCATCCTAAAGTAGCTTCATCCAAGTGCAAACTCCAACTAATCTCTGATAAC 1026 |||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1414 CTTCGGAGGCATCCTAAAGTAGCTTCATCCAAGTGCAAACTGCAACTTATCTCTGATAAC 1473 Query 1027 CTCAGCTTGTCATCTCAAGACTG 1049 |||||||| |||||| ||||||| Sbjct 1474 CTCAGCTTATCATCTAAAGACTG 1496 > AT4G14103.2 | Symbols: | F-box/RNI-like superfamily protein | chr4:8126915-8128833 FORWARD LENGTH=1608 Length=1608 Score = 477 bits (258), Expect = 9e-134 Identities = 501/615 (81%), Gaps = 30/615 (5%) Strand=Plus/Plus Query 116 TTTCTACAAGTTTTATGGCTTTTGTGGATCA-TGTGTTGGCATTGCAAGGCAATTCTCCT 174 |||||||||||||||||| |||||||||| | |||||||| |||||||| ||||||||| Sbjct 230 TTTCTACAAGTTTTATGGATTTTGTGGAT-AGAGTGTTGGCTTTGCAAGGTAATTCTCCT 288 Query 175 CTACACAAGTTCTCTCTAAAG-TTCGGAGACGGTGTTGTTGATCGATTCCGTGTCATTCG 233 ||||||||||||||||||||| || ||||| || ||| ||| | ||||| |||||| Sbjct 289 CTACACAAGTTCTCTCTAAAGATT-GGAGATGGCATTG---ATCCAGTCCGTATCATTCC 344 Query 234 TTGGATAC-TCAAGGTGTTGGAACGCGGAGTATCCGATCTTGAACTAGACATGCATTTGA 292 ||||||| | || ||||||||||| || |||||||||||||| ||| || || ||||| Sbjct 345 TTGGATAAAT-AATGTGTTGGAACGGGGTGTATCCGATCTTGATCTACACCTGAATTTGG 403 Query 293 AATG-GAAATCTTCA-CTTCCTTCA-AAGATCTTTTTGAGCGAGACACTCGTTAGGCTGA 349 ||| ||| | ||| ||||||||| ||| ||| ||| || ||||||| ||| |||||| Sbjct 404 AATCAGAA-T-TTCTGCTTCCTTCACAAG-TCTACTTGTGCAAGACACTGGTTTGGCTGA 460 Query 350 AACTAAG-TGTGGA-TCGTGGCCCGA-GAATTGATGTTGATGATGTTCATCTTCCTAAGC 406 | ||||| | ||| | | ||| | || |||||||||| ||||||||||| || |||| Sbjct 461 AGCTAAGGTTTGGGCTA-TATCCC-ACGA-TTGATGTTGAAGATGTTCATCTCCCAAAGC 517 Query 407 TTAAGACTCTCCATATTGAGTCAGTCAAATTTGAACAGCATGGTATTGGGCTTAACAAGC 466 ||||||| || |||||||| || | | |||||| |||||||| ||||||||| ||||| Sbjct 518 TTAAGACGCTTTATATTGAGGCAACCCATTTTGAAGAGCATGGTGTTGGGCTTACCAAGC 577 Query 467 TTCTTTCTGGTTGTCACATACTTGAGGAGTTAATTCTGGAAT-ATATATCTTGGTGCCTA 525 ||||||||||||||| ||| |||||||| ||| |||| || | |||||||||||| | | Sbjct 578 TTCTTTCTGGTTGTCCCATGCTTGAGGATTTAGTTCTTGA-TGATATATCTTGGTTCATT 636 Query 526 TGGGAATTTGTCTCTGTGTCTAG-CACAACTCTCAAGAGACTAACGTTTTGCGGGGAACT 584 ||||| |||| ||| |||||| | | ||||||||||||| |||| |||| || || || Sbjct 637 TGGGATTTTGCCTCGGTGTCT-GTCCCAACTCTCAAGAGGCTAAGGTTTAGCTGGCAAG- 694 Query 585 AATGCAAGATGAGAATCCGATTAGTGTGTTGTTAGATACTCCGAATCTTGTCTACTTGAA 644 | || ||||||| ||| | ||||||||||||||||||||||||||||| |||||||| Sbjct 695 A--GCGAGATGAGTTTCCAAAGAGTGTGTTGTTAGATACTCCGAATCTTGTATACTTGAA 752 Query 645 GTTTACTGATGTTATTGC-GGACGAGTATTCAAAAGTGAACTTCGATTCGCTTGTTGAAG 703 |||||||||| | |||| || | ||||| | |||||||| || ||||| |||||||||| Sbjct 753 GTTTACTGATACTGTTGCAGG-CAAGTATCCGAAAGTGAATTTGGATTCCCTTGTTGAAG 811 Query 704 CCCATATCAATCTTC 718 | |||||| |||||| Sbjct 812 CTCATATCGATCTTC 826 Score = 137 bits (74), Expect = 2e-31 Identities = 163/204 (80%), Gaps = 13/204 (6%) Strand=Plus/Plus Query 846 TGAGATAGAGAAGAAGATAGACCAAG-TCAAGCACTTTC-TAGAGACGATGCCGTATGTT 903 ||| || |||||| ||| ||| | || ||||| | |||| | ||||| |||||| || || Sbjct 1134 TGACATGGAGAAGCAGAGAGAGC-AGATCAAGTA-TTTCTTGGAGACAATGCCGAATCTT 1191 Query 904 GAGCAA-CTGATATTACACTACAACACACCAATTGATGAGGATGTGATTGAAGTTTACCA 962 ||| || |||| || ||||||| ||||||| || ||| ||||| | |||||||| | | Sbjct 1192 GAG-AAGATGATTTTGTACTACAATACACCAAGTGTTGAAGATGTAACTGAAGTTT-CAA 1249 Query 963 G-CAACTTCAGAGGC-A--TCCTAAAGTAGCTTCATCCA-AGTGCAAACTCCAACTAATC 1017 | | ||||||||||| | | |||||||||||||||| | | || | ||||||||||| Sbjct 1250 GCCGACTTCAGAGGCTAGTTTCTAAAGTAGCTTCATCGACA-TGTATTGTCCAACTAATC 1308 Query 1018 TCTGATAACCTCAGCTTGTCATCT 1041 |||||||||||||||||||||||| Sbjct 1309 TCTGATAACCTCAGCTTGTCATCT 1332 > AT4G14096.1 | Symbols: | F-box/RNI-like superfamily protein | chr4:8124415-8126514 FORWARD LENGTH=1825 Length=1825 Score = 449 bits (243), Expect = 2e-125 Identities = 501/620 (81%), Gaps = 39/620 (6%) Strand=Plus/Plus Query 116 TTTCTACAAGTTTTATGGCTTTTGTGGATCA-TGTGTTGGCATTGCAAGGCAATTCTCC- 173 ||||| |||||||||||| |||||||||| | |||||||||||||||||||||||||| Sbjct 303 TTTCTTCAAGTTTTATGGATTTTGTGGAT-AGAGTGTTGGCATTGCAAGGCAATTCTCCA 361 Query 174 TCTACACAAGTTCTCTCTAAAGTTCGGAGACGGTGTTGTTGATCGATTCCGTGTCATTCG 233 | |||| ||||||||||||||| ||||||| || ||||| | | |||| |||||| Sbjct 362 T-TACATAAGTTCTCTCTAAAGATCGGAGA---TGGCGTTGAACCAGACCGTATCATTCC 417 Query 234 TTGGAT-ACTCAAGGTGTTGGAACGCGGAGTATCCGATCTTGAACTAGACATGCAT-TTG 291 |||||| | | || |||||||||||||| |||||||||||||| ||| || || || | | Sbjct 418 TTGGATAAAT-AATGTGTTGGAACGCGGTGTATCCGATCTTGATCTACACGTGTATATGG 476 Query 292 AAATGGAAATCTT-CACTTCCTTCAAAGATCTTTTTGAGCGAGACACTCGTTAGGCTGAA 350 ||| || ||| || |||||||| |||| || |||||| ||||||| ||||||||||| Sbjct 477 AAACGG-AAT-TTGTGTTTCCTTCAGAGATGTTCTTGAGCAAGACACTGGTTAGGCTGAA 534 Query 351 ACTAAGTG-TGGATCGTGGCCCGAGAATTGATGTTGATGATGTTCATCTTCCTAAGCTTA 409 |||| || | ||| | | | | | || |||| |||||| |||| || ||||||| Sbjct 535 GCTAA-TGCTATATCCT--CTCTTGGA---AT-TTGAAGATGTTTATCTCCCGAAGCTTA 587 Query 410 AGACTCTCCATATTGAGTCAGT-CAAATTTGAACAGCATGGTATTGGGCTTAACAAGCTT 468 |||| || ||||||| ||| | | | |||||| || ||||||||||||||| ||||||| Sbjct 588 AGACGCTTTATATTGACTCA-TGCTATTTTGAAAAGTATGGTATTGGGCTTACCAAGCTT 646 Query 469 CTTTCTGGTTGTCACATACTTGAGGAGTTAATTCTGGAAT-ATATATCTTGGTGC-CTAT 526 ||||||||||||| |||||||||||| ||| |||| | || ||||| |||||||| || | Sbjct 647 CTTTCTGGTTGTCCCATACTTGAGGATTTAGTTCTTG-ATGATATACCTTGGTGCACT-T 704 Query 527 GGGAATTTGTCTCTGTGTCTAG-CACAACTCTCAAGAGACTAACGTTTTGCGGGGAACTA 585 |||| |||| ||| |||||| | | ||||||||||||||||||||||| || | | | Sbjct 705 GGGATTTTGCCTCGGTGTCT-GTCCCAACTCTCAAGAGACTAACGTTTAGC-ACG--C-A 759 Query 586 A-TGCAAGATGAGAATCCGATTAGTGTGT-TGTTAGATACTCCGAATCTTGTCTACTTGA 643 | ||| ||||||| ||| | ||||||| | || ||||||||||||||||||||||||| Sbjct 760 AGTGCGAGATGAGTTTCCAAAGAGTGTGTCTATT-GATACTCCGAATCTTGTCTACTTGA 818 Query 644 AGTTTACTGATGTTATTGC-GGACGAGTATTCAAAAGTGAACTTCGATTCGCTTGTTGAA 702 |||||||||| | |||| || | ||||| | |||||||| |||||||||||||||||| Sbjct 819 AGTTTACTGACACTGTTGCAGG-CAAGTATCCGAAAGTGAATTTCGATTCGCTTGTTGAA 877 Query 703 GCCCATATCAATCTTCAGAT 722 || |||||| ||||| |||| Sbjct 878 GCTCATATCGATCTT-AGAT 896 Score = 132 bits (71), Expect = 8e-30 Identities = 161/203 (79%), Gaps = 11/203 (5%) Strand=Plus/Plus Query 846 TGAGATAGAGAAGAAGATAGACCAAG-TCAAGCACTTTC-TAGAGACGATGCCGTATGTT 903 ||| || |||||| ||| ||| | || ||||| | |||| | ||||| |||||| || || Sbjct 1282 TGACATGGAGAAGCAGAGAGAGC-AGATCAAGTA-TTTCTTGGAGACAATGCCGAATCTT 1339 Query 904 GAGCAA-CTGATATTACACTACAACACACCAATTGATGAGGATGTGATTGAAGTTTACCA 962 ||| || |||| || ||||||| ||| ||| || ||| ||||| | |||||||| | | Sbjct 1340 GAG-AAGATGATTTTGTACTACAATACAACAAGTGTTGAAGATGTAACTGAAGTTT-CAA 1397 Query 963 G-CAACTTCAGAGGC-A--TCCTAAAGTAGCTTCATCCAAGTGCAAACTCCAACTAATCT 1018 | | |||||||||| | | ||||| |||||||||| | ||||| |||||||||||| Sbjct 1398 GCCGGCTTCAGAGGCTAGTTTCTAAATTAGCTTCATCGACGTGCATTGTCCAACTAATCT 1457 Query 1019 CTGATAACCTCAGCTTGTCATCT 1041 ||||||||||||||||||||||| Sbjct 1458 CTGATAACCTCAGCTTGTCATCT 1480 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51490000675 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5