BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907643

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05470.1 | Symbols:  | Actin-binding FH2 (formin homology 2)...   219    1e-56


> AT3G05470.1 | Symbols:  | Actin-binding FH2 (formin homology 
2) family protein | chr3:1579667-1582547 REVERSE LENGTH=2655
Length=2655

 Score =  219 bits (118),  Expect = 1e-56
 Identities = 143/155 (92%), Gaps = 1/155 (1%)
 Strand=Plus/Plus

Query  112   GAGAAAGAGAAGGATTACAGAAGGATGGGGCTCGATCTCGTCTCGTGTCTAAATACAAAG  171
             ||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct  2203  GAGAAAGAGGAGGATTACAGAAGGATGGGGCTCGATCTCGTCTCGGGTCTAAACACAGAG  2262

Query  172   CTACGAAGCGTGAAGAAGACGGCAACGATTGATCTGAAAGGTCTTGTTACCTCGGTGTCT  231
             ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct  2263  CTACGAAACGTGAAGAAGACGGCAACGATTGATCTGGAAGGTCTTGTTACCTCGGTGTCC  2322

Query  232   AATCTAAGAGATGGGTTGGGACCGTTG-GATGTCT  265
             ||||| |||||||||||||| | |||| | |||||
Sbjct  2323  AATCTGAGAGATGGGTTGGGGCAGTTGAGCTGTCT  2357



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12215063007


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5