BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907670
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05642.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 278 2e-74
> AT2G05642.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr2:2098087-2101167 REVERSE LENGTH=1889
Length=1889
Score = 278 bits (150), Expect = 2e-74
Identities = 208/235 (89%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 1 ATGCCGCTAGAAGTAACACCAGTTTCACAGCTTAATTC-CGACCTCTCAACATGCAAAGT 59
|||||||| ||| ||||||| ||||||||||| |||| | |||| ||||| ||||||||
Sbjct 125 ATGCCGCTGGAAATAACACCGGTTTCACAGCTGCATTCTC-ACCTGTCAACGTGCAAAGT 183
Query 60 TAAAGTCCGGATTGCTCGCG-TCTGGGCATACCATAAAAAAGATAGACCCAGAGATATTA 118
||||| || |||||||| | | ||||||||||| |||||||| ||||||| ||||||||
Sbjct 184 GAAAGTTCGAATTGCTCG-GTTATGGGCATACCACAAAAAAGACAGACCCAAAGATATTA 242
Query 119 CGGGAATAGACCTTCTCCTCGTGGATGACAAGGGAGATAGGATACAAGCCTCCATCAGAT 178
||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 243 TGGGAATAGACCTTCTATTGGTGGATGACAAGGGAGAGAGGATACAAGCCTCCATCAGAT 302
Query 179 CGCAATTACTTACAAAATTTCAGG-GAAAACTAGAAGAGGG-GATTGCTACATGA 231
||||||||||| |||||||||||| |||| ||||||||||| |||||||||||||
Sbjct 303 CGCAATTACTTTCAAAATTTCAGGAGAAA-CTAGAAGAGGGAGATTGCTACATGA 356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10405424043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5