BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907677
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17230.1 | Symbols: EXL5 | EXORDIUM like 5 | chr2:7494536-74... 418 3e-116
> AT2G17230.1 | Symbols: EXL5 | EXORDIUM like 5 | chr2:7494536-7496016
REVERSE LENGTH=1481
Length=1481
Score = 418 bits (226), Expect = 3e-116
Identities = 268/289 (93%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 135 TATCTGGTACGGACGTTGGTCACGCCCACACAAATCCCTAATCAGAGATTTCCTCAATTC 194
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TATCTGGTACGGACAATGGTCACGCCCACACAAATCCCTAATCAGAGATTTCCTCAATTC 380
Query 195 AATCTCCGACGCTAAAGCTCCTTCTCCCTCCGTCACTGAATGGTGGCGCACCGCTTCTCT 254
||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||
Sbjct 381 TATCTCCGACGCTAAAGCACCTTCTCCCTCCGTCTCCGAATGGTGGCGCACCGCTTCTCT 440
Query 255 TTACGCAGATCAAACCGGAGCTAACGTATCTAGATCCGTCTTAATCGCCGGTGAATACTC 314
||| |||||||||||||| | ||||| ||||||||||| ||||||||||| ||||||||
Sbjct 441 CTACACAGATCAAACCGGATCCAACGTCTCTAGATCCGTTTTAATCGCCGGAGAATACTC 500
Query 315 CGATTCGAAATACTCCCACGGCCAACACCTGACTCGTCTCACGATTCAGGACGTTATCGC 374
|||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 501 CGATTCTAAATACTCCCACGGCCAACACCTTACTCGTCTCACGATTCAGGAAGTCATCGC 560
Query 375 CTCCGCCGCGAGATCCGCTTCGTTTCCGGTGGATCACAAAAATGGAATG 423
||||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct 561 CTCCGCCGCCAGATCCGCTTCCTTTCCGGTGGATCATAAAAACGGAATG 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25117073500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5