BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907679
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57780.1 | Symbols: | heavy-metal-associated domain-contain... 660 0.0
AT4G13380.1 | Symbols: MEE56 | Heavy metal transport/detoxifica... 78.7 7e-14
> AT1G57780.1 | Symbols: | heavy-metal-associated domain-containing
protein | chr1:21403000-21404228 FORWARD LENGTH=795
Length=795
Score = 660 bits (357), Expect = 0.0
Identities = 402/424 (95%), Gaps = 2/424 (0%)
Strand=Plus/Plus
Query 310 AATGATGATAAACCGGAAACAAGTATAATGGAAGTGGAGTTCGGTATACCATTTCTCTGT 369
|||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 373 AATGCTGATAAACCTGAAACAAGTATAATGGAAGTGGAGTTCGATATACCATTTCTCTGC 432
Query 370 GAAAAATACGAGAAAAG-TTTTAGAAAAGTTATTTCCAAATGGACAGGTGTTGAAACATA 428
|| ||||||||| |||| |||| ||||||||||||||||||| |||||||||||||||||
Sbjct 433 GAGAAATACGAG-AAAGATTTTGGAAAAGTTATTTCCAAATGCACAGGTGTTGAAACATA 491
Query 429 TGTAATGGATCTAGAAAATAAAAAGGTTGTGGTCATTGGTAACTTTGATAAGGATGAATT 488
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 492 TGTAGTGGATCTAGAAAATAAAAAGGTTGTGGTCATTGGAAACTTTGATAAGGATGAACT 551
Query 489 GTCGAGAAAACTTAATAAGAAGATGCAACAAAAGATTAAAAAGGCTGAAAAGGAAAGGCA 548
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 552 GTCGAGAAAACTTAATAAGAAGATGCATCAAAAGATTAAAAAAGCTGAAAAGGAAAGACA 611
Query 549 GGAGTGGGAATCTGAAATGATGTTAAAGGAGGCTGAAGAAGAAAAAAGAGTTGCAGAGAT 608
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 612 GGAGTGGGAATCTGAAATGATGTTAAGGGAGGCTGAAGAAGAAAAAAGACTTGCAGATAT 671
Query 609 TTATGAAGAAATCGACAAGGATAGAAATGTATATCTCAACCCAATTACTGATTATGAAAA 668
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 672 TTATGAAGAAATCGACAAGGATAGAAATGTATCTCTCAACCCAATTACTGATTATGAAAA 731
Query 669 GGAGATGGCTAAACATTATAACATGTTCAGTGATGAAAATCCTAATGCATGTTCTATTTC 728
||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 732 GGAGATGGCCAAACATTATTACATGTTTAGTGATGAAAATCCTAATGCATGTTCTATTTC 791
Query 729 GTAA 732
||||
Sbjct 792 GTAA 795
Score = 492 bits (266), Expect = 2e-138
Identities = 306/324 (94%), Gaps = 8/324 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTCCTGGTT-AA--AGCCACAAGGAATCACAACTATGATGGGTCGCTGGTTAACG 57
||||||| ||||| || ||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 ATGGGTTGTTGGTTAAAGCAGCCACAAGGAATCACAACTATGATGGGTTGTTGGTTAACG 60
Query 58 AAATCAAGAGAAAACATTCTCGACAATGTAATTGTAACAGATGCCGAGTTGAAGATTTCG 117
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 AAATCAAGAGAAAACATTCTCGACAATGTAATTGTAACAGATGCCAAGTTGAAGATTTCG 120
Query 118 ATGAATTTTGAAGATTGCGCGAAAAAGATCAGAAAAGTTGCTTGCCAATTCGAAGGAGTT 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 ATGAATTTTGAAGATTGCGCGAAAAAGATCAGAAAAGTTGCTTGCCAATTCGAAG---TT 177
Query 178 AAATCATGCATCACGGATATAGATGATCAAAAAGTCTTGGTCAGTGGTGAATTT-AATTT 236
||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 178 AAATCATGCATAACGGATATAGATGATCAAAAAGTCCTGGTCAGTGGTGA-TTTCAATTT 236
Query 237 GCATAAATTGGTGAAGACTCTCAAGaaaaaaaCTGGTAAAAAGATAGAAATTGTGATGAA 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 237 GCATAAATTGGTGAAGACTCTCAAGAAAAAAACTGGTAAAAAGATAGAAATTGTGACGAA 296
Query 297 GAATGAGAAATCTAATGATGATAA 320
|||||||||||||| ||| |||||
Sbjct 297 GAATGAGAAATCTAGTGAAGATAA 320
> AT4G13380.1 | Symbols: MEE56 | Heavy metal transport/detoxification
superfamily protein | chr4:7781782-7782553 FORWARD LENGTH=588
Length=588
Score = 78.7 bits (42), Expect = 7e-14
Identities = 99/125 (79%), Gaps = 9/125 (7%)
Strand=Plus/Plus
Query 611 ATGAAG-AAATCGACAA-GGATAGAAATGTATATCTCAACCCAATTACTGATTATGA-AA 667
|||||| |||| || || |||||| ||| ||| | ||||| | || |||| |||| ||
Sbjct 470 ATGAAGAAAAT-GA-AATTGATAGAGGTGTTTATATGAACCCTAGTAGTGATGATGAGAA 527
Query 668 AGGAGATGGCTAAACATTATAACATGTTCAGTGATGAAAATCCTAATGCATGTTCTATTT 727
| || |||||| | | | | ||||| |||||||||||||||||||||||||||||||
Sbjct 528 A-GAAATGGCT--AGA-TGGATGATGTTTAGTGATGAAAATCCTAATGCATGTTCTATTT 583
Query 728 CGTAA 732
|||||
Sbjct 584 CGTAA 588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5