BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907699

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-...   231    3e-60
  AT2G41740.1 | Symbols: VLN2, ATVLN2 | villin 2 | chr2:17410715-...   156    2e-37


> AT3G57410.1 | Symbols: VLN3, ATVLN3 | villin 3 | chr3:21243136-21251100 
REVERSE LENGTH=3479
Length=3479

 Score =  231 bits (125),  Expect = 3e-60
 Identities = 153/167 (92%), Gaps = 0/167 (0%)
 Strand=Plus/Plus

Query  1     ATGACATATTTGTTTAAGGGAAGAGCACTACAGGCCCATATATTTGAGGGTAAAGAGCCT  60
             |||||| ||| ||| ||||||||| || | ||||||| ||||||||||||||||||||||
Sbjct  1575  ATGACAAATTCGTTGAAGGGAAGACCAGTGCAGGCCCGTATATTTGAGGGTAAAGAGCCT  1634

Query  61    CCACAATTTGTTGCACTTTTTCAACATATGGTGGTCCTTAAGGGTGGTTTGAGCTCTGGT  120
             |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  1635  CCACAATTTGTTGCACTTTTTCAACATATGGTTGTCCTTAAGGGCGGTTTGAGCTCTGGT  1694

Query  121   TACAAAAACAGAATGATAGAGAAAGGTTCATCAGACGAAACCTACAC  167
             |||||||| || |||| |||||||||||| |||| ||||||||||||
Sbjct  1695  TACAAAAATAGTATGACAGAGAAAGGTTCGTCAGGCGAAACCTACAC  1741


 Score =  145 bits (78),  Expect = 3e-34
 Identities = 136/161 (84%), Gaps = 15/161 (9%)
 Strand=Plus/Plus

Query  200   GTGCAAGGGAATTCCTTCCAGAAGAAGGCAGCATTATTACTTGGTGCAC-----GTTCTG  254
             |||||||||||||||| |||||||||||||||||||||||||||| |||     ||| ||
Sbjct  2370  GTGCAAGGGAATTCCTACCAGAAGAAGGCAGCATTATTACTTGGTACACACCACGTTGTG  2429

Query  255   GAGATACTTCATGCATGGTCTAGCAGTGGTAACCAAGGACCAAGGCAAAGTGCCTGCTGC  314
             |||  | | || |  |   |||||||||| |||||||||||||||||||| || ||||||
Sbjct  2430  GAGG-A-T-CA-G--T---CTAGCAGTGGGAACCAAGGACCAAGGCAAAGGGC-TGCTGC  2479

Query  315   TTTATTTGCCTTGACTTCTGCATTTAATTCTTCTTCCGGGA  355
             ||||  ||||||||||||||| |||||||||||||| ||||
Sbjct  2480  TTTAGCTGCCTTGACTTCTGCCTTTAATTCTTCTTCTGGGA  2520


> AT2G41740.1 | Symbols: VLN2, ATVLN2 | villin 2 | chr2:17410715-17417740 
REVERSE LENGTH=3541
Length=3541

 Score =  156 bits (84),  Expect = 2e-37
 Identities = 134/158 (85%), Gaps = 4/158 (3%)
 Strand=Plus/Plus

Query  12    GTTTAAGGGAAGAGCACTACAGGCCCATATATTTGAGGGTAAAGAGCCTCCACAATTTGT  71
             ||| || |||||| |  | |||| || |||||  ||||||||||||||||||||||||||
Sbjct  1749  GTTAAAAGGAAGACCTGTGCAGGGCCGTATATACGAGGGTAAAGAGCCTCCACAATTTGT  1808

Query  72    TGCACTTTTTCAACATATGGTGGTCCTTAA-GGGTGGTTTGAGCTCTGGTTACAAAAACA  130
             ||| |||||||||| |||||||||| |||| |||||||||||||||||| ||||||| ||
Sbjct  1809  TGCCCTTTTTCAACCTATGGTGGTC-TTAAAGGGTGGTTTGAGCTCTGGGTACAAAAGCA  1867

Query  131   GAATGATAGAGAAAG-GTTCATCAGACGAAACCTACAC  167
             | |||  ||||  || || || ||||||||||||||||
Sbjct  1868  GTATGGGAGAGTCAGAGT-CAACAGACGAAACCTACAC  1904



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16889963664


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5