BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907722
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64820.1 | Symbols: | MATE efflux family protein | chr1:240... 2200 0.0
AT1G66780.1 | Symbols: | MATE efflux family protein | chr1:249... 1234 0.0
> AT1G64820.1 | Symbols: | MATE efflux family protein | chr1:24088605-24090558
FORWARD LENGTH=1509
Length=1509
Score = 2200 bits (1191), Expect = 0.0
Identities = 1405/1510 (93%), Gaps = 8/1510 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAAGGATTTCTCGTTGGTGC----GGA--ATGAGGAAGAAGAAGATAACAGGAAT 54
||||||| ||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct 1 ATGGAAACGGATTTCTCGTTGGTGCGTAAGGAGGAGGAAGAAGAAGAAGATAACAGGAAT 60
Query 55 GGGGCGAGTTATTTGTCAGTGGAGATGATGAAGAAGGTGAGTTCCATGGCAGCTCCAATG 114
||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct 61 GGGATGAGTTATTTGTCAATGGAGATGATGAAGAAGGTGAGCTCCATGGCGGCTCCAATG 120
Query 115 GTGGCAGTTTCGGTTTCTCAGTTCCTCCTGCAAGTCATCTCCATGGTTATGGCTGGTCAC 174
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 121 GTGGCAGTTTCGGTTTCTCAATTCCTCCTTCAAGTCATCTCCATGGTTATGGCTGGTCAT 180
Query 175 TTGGACGAGCTCTCACTCTCAGCTGTTGCAATCGCCACTTCCCTCACTAATGTCACCGGT 234
|||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| |||
Sbjct 181 TTGGACGAGCTCTCGCTCTCAGCTGTCGCAATTGCCACTTCCCTCACCAATGTCACTGGT 240
Query 235 TTTAGCCTCATCGTTGGGTTTGCAGGTGCGTTAGAGACTCTGTGTGGTCAAGCTTTTGGA 294
|| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 241 TTCAGCCTCATCGTTGGGTTTGCAGGTGCGTTAGACACTCTTTGCGGTCAAGCTTTTGGA 300
Query 295 GCAGAACAATTTGGAAAAATTGGGGCATACACGTACAGCTCAATGCTTTGTCTTCTTGTC 354
||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 301 GCAGAACAATTTGGAAAAATTGGTGCATACACTTACAGCTCAATGCTCTGTCTTCTCGTT 360
Query 355 TTCTGTTTTCCAGTCTCTCTTGTATGGATCTTCATGGACAAACTCTTGGAGCTCTTCCAT 414
||||||||| || ||||| | |||||| | ||||||||||| ||||||||| | ||||||
Sbjct 361 TTCTGTTTTTCAATCTCTATCGTATGGTTTTTCATGGACAAGCTCTTGGAGATTTTCCAT 420
Query 415 CAAGATCCTCTAATCTCTCAGTTAGCTTGCAGATACTCAATCTGGCTAATACCGGCTTTA 474
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 421 CAAGATCCTCTCATCTCTCAATTAGCTTGCAGATACTCAATCTGGCTCATACCGGCTTTA 480
Query 475 TTCGGATTTGCTCTTCTTCAACCTATGACTTGCTATTTCCAGTCACAAGGATTAATTCTT 534
|||||||| |||||||||||||||||||| | |||||||||||||||||| ||| ||||
Sbjct 481 TTCGGATTCACTCTTCTTCAACCTATGACTCGGTATTTCCAGTCACAAGGAATAACTCTT 540
Query 535 CCTCTCTTCGTGAGCTCTCTTGGAGCTATCTGTTTTCACATTCCTTTCTGTTGGCTTCTT 594
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 541 CCTCTCTTCGTGAGCTCTCTTGGAGCTCTTTGTTTTCACATTCCTTTCTGTTGGCTTCTT 600
Query 595 GTCTATAAACTGAGATTTGGAATCGTTGGCGCCGCTTTGTCCATCGGGTTTTCATATTGG 654
||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 601 GTCTATAAACTGAAATTTGGAATAGTTGGCGCCGCTTTGTCCATCGGTTTTTCATATTGG 660
Query 655 CTCAACGTGTTTTTGCTTCGGATTTTCATGAGTA-ACTCTGCTTTGCATCGTGAAATGAA 713
|||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct 661 CTCAACGTATTTTTGCTTTGGATTTTCATGAG-ATACTCTGCTTTGCATCGTGAAATGAA 719
Query 714 AAACCTTGGTTTGCAAGAACTCATCTCGAGCATGAAGCAGTTCATCGCCCTCGCTATCCC 773
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 GAATCTTGGTTTGCAAGAACTCATCTCGAGCATGAAGCAGTTCATCGCCCTCGCGATCCC 779
Query 774 CTCTGCAATGATGATATGCCTGGAATGGTGGTCGTTTGAGATTCTACTACTAATGTCTGG 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTCTGCAATGATGATATGCCTGGAATGGTGGTCGTTTGAGATTCTACTACTAATGTCTGG 839
Query 834 ACTCTTACCAAACTCAAAGCTCGAAACATCGGTGATATCCATTTGCCTCACAACATCGGC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACTCTTACCAAACTCAAAGCTCGAAACATCGGTGATATCCATTTGCCTCACAACATCGGC 899
Query 894 TTTGCATTTCGTTCTGGTGAATGCGATAGGAGCATCCGCAAGCACATATGTTTCAAACGA 953
| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 900 TGTGCATTTCGTTCTGGTGAATGCGATAGGAGCATCCGCAAGCACACATGTCTCAAACGA 959
Query 954 GCTAGGAGCTGGAAATCACAGGGCAGCTCGAGCGGCGGTTAGTTCGGCTATTTTCCTGGG 1013
|||||||||||||||||| |||||||||||||| ||||||| ||| || |||||||| ||
Sbjct 960 GCTAGGAGCTGGAAATCATAGGGCAGCTCGAGCCGCGGTTAATTCTGCCATTTTCCTTGG 1019
Query 1014 TGGTGTTGATGCAACAATAGCAAGCATCACACTTTACAGTTACCGAAATAGTTGGGGTTA 1073
|||||||| |||| |||| ||| |||||||||||||||||||||||| |||||||||||
Sbjct 1020 TGGTGTTGGTGCATTAATAACAACCATCACACTTTACAGTTACCGAAAAAGTTGGGGTTA 1079
Query 1074 TATATTCAGCAACGAGAAAGAAGTGGCTCACTACGTAACCCAAATCACACCCATTCTCTG 1133
| ||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1080 TGTATTCAGCAACGAGAGAGAAGTGGTTCGCTACGCAACCCAAATCACACCCATTCTCTG 1139
Query 1134 CCTATTTATTTTCGTTAACAGTTTTCTTGCCGTGCTATCAGGGGTTGCCAGAGGAACAGG 1193
||||| |||||||||||||| ||||| |||||||| |||||||||||||||||| ||||
Sbjct 1140 CCTATCCATTTTCGTTAACAGCTTTCTCGCCGTGCTCTCAGGGGTTGCCAGAGGATCAGG 1199
Query 1194 CTGGCAACGTATAGGAGGTTATGCAAGTTTAGGATCATATTATCTTGTCGGAATCCCGTT 1253
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1200 GTGGCAACGTATAGGAGGTTATGCAAGCTTAGGATCATATTATCTTGTCGGAATCCCGTT 1259
Query 1254 AGGTTGGATCTTGTGTTTTGTCATGAAGTTGAGAGGAAAAGGACTTTGGATTGGTATACT 1313
||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1260 AGGATGGTTCTTGTGTTTTGTCATGAAATTGAGAGGGAAAGGACTTTGGATTGGTATACT 1319
Query 1314 CATAGCCTCCACTATCCAACTAAGTGTTTTTACCCTTGTCACCTTCTTCACCAATTGGGA 1373
||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||||||
Sbjct 1320 CATAGCCTCCACTATCCAACTCATTGTTTTTGCTCTTGTCACCTTCTTCACCAATTGGGA 1379
Query 1374 ACAAGAGGCAACGAGAGCCAGAGACAGAGTATTCGAGATGACACCACAAGTCAAAGGCAA 1433
|||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1380 ACAAGAGGCAACGAAAGCTAGAGACAGAGTATTCGAGATGACACCTCAAGTCAAAGGCAA 1439
Query 1434 CCAAAAGACACAAATTATATTGGAAGAGGATACACAAGTTTTACTTAATCATATTACAGA 1493
|||||| |||||||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 1440 CCAAAAAACACAAATTATAGTAGAAGAGGATACACAAGTTTTACTTAATCATATTGCAGA 1499
Query 1494 AACTGTTTAA 1503
|||||| |||
Sbjct 1500 AACTGTGTAA 1509
> AT1G66780.1 | Symbols: | MATE efflux family protein | chr1:24909213-24911485
FORWARD LENGTH=1458
Length=1458
Score = 1234 bits (668), Expect = 0.0
Identities = 1151/1382 (83%), Gaps = 42/1382 (3%)
Strand=Plus/Plus
Query 63 TTATTTGTCAGTGGAGATGATGAAGAAGGTGAG-TTCCATGGCAGCTCCAATGGTGGCAG 121
|||||||||| ||||||||||||||||| || || |||||| || ||||||||||| |
Sbjct 87 TTATTTGTCAACAGAGATGATGAAGAAGGTAAGCTT-CATGGCTGCACCAATGGTGGCTG 145
Query 122 TTTCGGTTTCTCAGTTCCTCCTGCAAGTCATCTCCATGGTTATGGCTGGTCACTTGGACG 181
| | | |||||| | |||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 146 TGGCTGCTTCTCAATACCTCCTTCAAGTTATCTCCATTGTTATGGCTGGTCACTTGGACG 205
Query 182 AGCTCTCACTCTCAGCTGTTGCAATCGCCACTTCCCTCACTAATGTCACCGGTTTTAGCC 241
|||| || |||||||| ||||| || |||||||| || || ||||||||||| || ||||
Sbjct 206 AGCTTTCTCTCTCAGCCGTTGCTATTGCCACTTCTCTTACCAATGTCACCGGCTTCAGCC 265
Query 242 TCATCGTTGGGTTTGCAGGTGCGTTAGAGACTCTGTGTGGTCAAGCTTTTGGAGCAGAAC 301
||||| |||| || ||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 266 TCATCTTTGGATTGGCAGGTGCGTTAGAGACACTGTGTGGTCAAGCTTTTGGAGCTGGGC 325
Query 302 AATTT-GGAAAAATTGGGGCATACACGTACAGCTCAATGCTTTGTCTTCT-TGTCTTCTG 359
||||| || || || | |||||||| ||| |||||||||| |||||||| | | ||||
Sbjct 326 AATTTAGG-AATATCAGTGCATACACTTACGGCTCAATGCTATGTCTTCTCT-TGGTCTG 383
Query 360 TTTTCCAGTCTCTCTTGTATGGATCTTCATGGACAAACTCTTGGAGCTCTTCCATCAAGA 419
||| ||| |||| ||| | ||| | || |||||||||||||||||||| |||||||||||
Sbjct 384 TTTCCCAATCTCACTTTTGTGGGTTTTTATGGACAAACTCTTGGAGCTTTTCCATCAAGA 443
Query 420 TCCTCTAATCTCTCAGTTAGCTTGCAGATACTCAATCTGGCTAATACCGGCTTTATTCGG 479
|||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 444 TCCTCTTATCTCTCAATTAGCTTGTAGATACTCAATCTGGCTCATACCGGCTTTATTCGG 503
Query 480 AT-TTGCTCTTCTTCAACCTATGACTTGCTATTTCCAGTCACAAGGATTAATTCTTCCTC 538
|| | || |||||||| |||||||| | | |||||||||||||||||| |||| ||||
Sbjct 504 ATACT-CTGTTCTTCAATCTATGACTCGATTTTTCCAGTCACAAGGATTGGTTCTACCTC 562
Query 539 TCTTCGTGAGCTCTCTTGGAGCTATCTGTTTTCACATT-CC-TTTCTGTTGGCTTCTTGT 596
||||| ||||||||||||||||| ||| ||||||| || || |||| | |||||||||||
Sbjct 563 TCTTCTTGAGCTCTCTTGGAGCTCTCTTTTTTCACGTTCCCTTTTC-G-TGGCTTCTTGT 620
Query 597 CTATAAACTGAGATTTGGAATCGTTGGCGCCGCTTTGTCCATCGGGTTTTCATATTGGCT 656
||||||||||||||| |||||||| ||||||||||||||||| || ||||| ||||||||
Sbjct 621 CTATAAACTGAGATTCGGAATCGTCGGCGCCGCTTTGTCCATAGGTTTTTCGTATTGGCT 680
Query 657 CAACGT-GTTTTTGCTTCGGATTTTCATGAGTA-ACTCTGCTTTGC-ATCG-TGAAA-TG 711
|||||| | ||||||| || ||||||||| | |||||||| | | |||| ||| ||
Sbjct 681 CAACGTAG-GTTTGCTTTGGGCTTTCATGAG-AGACTCTGCTCT-CTATCGAAAAAACTG 737
Query 712 AAAAACCTT-GGTTTGCAAGAACTCATCTCGAGCATGAAGCAGTTCATCGCCCTCGCTAT 770
|| ||| || |||||| || | | |||||||||||||||||| |||| || ||
Sbjct 738 --GAATCTTCGG-GCACAAGAAATCTTTTTGAGCATGAAGCAGTTCATTACCCTAGCAAT 794
Query 771 CCCCTCTGCAATGATGA-TATGCCTGGAATGGTGGTCGTTTGAGATTC-TACTACTAATG 828
||| |||||||||||| | |||||||||||||||||||||||| ||| || ||||||||
Sbjct 795 TCCCACTGCAATGATGACT-TGCCTGGAATGGTGGTCGTTTGAGCTTCTTA-TACTAATG 852
Query 829 TCTGGACTCTTACCAAACTCAAAGCTCGAAACATCGGTGATATCCATTTGCCTCACAACA 888
|| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 853 TCAGGACTCTTACCAAACTCAAAGCTCGAAACATCGGTCCTATCCATTTGCCTAACAATG 912
Query 889 TCGGCTTTGCATTTCGTTCTGGTGAATGCGATAGGAGCATCCGCAAGCACATATGTTTCA 948
||| || |||||| |||| | |||||||| ||||||||| | || |||||| |||| |||
Sbjct 913 TCGTCTCTGCATTACGTTATCGTGAATGCCATAGGAGCAGCAGCGAGCACACATGTCTCA 972
Query 949 AACGAGCTAGGAGCTGGAAATC-ACAGGGCAGCTCGAGCGGCGGTTAGTTCGGCTATTTT 1007
||| |||||||||||||||||| | ||| |||||||| | |||| || ||| || |||||
Sbjct 973 AACAAGCTAGGAGCTGGAAATCCAAAGG-CAGCTCGATCTGCGGCTAATTCTGCGATTTT 1031
Query 1008 CCTGGGTGGTG-TTGATGCAACAATAGCAAGCATCACACTTTACAGTTACCGAA-ATAGT 1065
|| || || |||||||| | |||| |||||||| || ||||| ||| ||| | | |
Sbjct 1032 TCTTGGCA-TGATTGATGCAGCCATAGTAAGCATCAGTCTCTACAGCTACAGAAGAAA-T 1089
Query 1066 TGGGGTTATATATTCAGCAACGAGAAAGAAGTGGCTCACTACGTAACCCAAATCACACCC 1125
|||| |||||||||||| || |||| ||||| ||| |||| || || ||||||||||||
Sbjct 1090 TGGGCTTATATATTCAGTAATGAGAGTGAAGTCGCTGACTATGTCACTCAAATCACACCC 1149
Query 1126 ATTCTCTGCCTATTTATTT-TCGTTAACAGTTTTCTTGCCGTGCTATCAGGGGTTGCCAG 1184
||||||| |||| ||| | ||| |||| ||||| ||||| || ||||| ||||| ||
Sbjct 1150 TTTCTCTGTCTATCAATTGGT-GTTGACAGCTTTCTCGCCGTACTCTCAGGAGTTGCTAG 1208
Query 1185 AGGAACAGGCTGGCAACGTATAGGAGGTTATGCAAGTTTAGGATCATATTATCTTGTCGG 1244
||||||||| ||||||| |||||||| |||||||| ||||||| |||||||| |||||
Sbjct 1209 AGGAACAGGGTGGCAACATATAGGAGCTTATGCAAACATAGGATCGTATTATCTAGTCGG 1268
Query 1245 AATCCCGTTAGGTTGGATCTTGTGTTTTGTCA-TGAAGTTGAGAGGAAAAGGACTTTGGA 1303
|||||| |||||| |||||||||||||| | |||| |||||||| |||||||||||||
Sbjct 1269 GATCCCGGTAGGTTCAATCTTGTGTTTTGT-AGTGAAATTGAGAGGGAAAGGACTTTGGA 1327
Query 1304 TTGGTATACTCATAGCCTCCACTATCCAA-CTAAGTGTTTTTACCCTTGTCACCTTCTTC 1362
| |||||| | ||| |||||| | ||| | | |||| || | |||||||| ||||||
Sbjct 1328 TCGGTATATTGGTAGGTTCCACTCTACAAACGAT-TGTTCTTGCTCTTGTCACTTTCTTC 1386
Query 1363 ACCAATTGGGAACAAGAGGCAACGAGAGCC-AGAGACAGAGTATTCGAGATGACACCACA 1421
||||||||||||||||||| | ||| || | |||||||||||| ||||||||| ||||||
Sbjct 1387 ACCAATTGGGAACAAGAGGTAGCGA-AGGCTAGAGACAGAGTAATCGAGATGATACCACA 1445
Query 1422 AG 1423
||
Sbjct 1446 AG 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5