BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907778
Length=2676
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, typ... 3692 0.0
> AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, type
2 | chr1:24172899-24176310 REVERSE LENGTH=2845
Length=2845
Score = 3692 bits (1999), Expect = 0.0
Identities = 2413/2609 (92%), Gaps = 43/2609 (2%)
Strand=Plus/Plus
Query 79 TCACGCGCCTCCTCACTGTCTTCTTTACGCGTCGCTTCTCCGTTAATTCTACGCGCCGCC 138
||||||||| |||||| ||| || |||||||||||||||||||||||| |||||||||||
Sbjct 121 TCACGCGCCGCCTCACCGTCATCATTACGCGTCGCTTCTCCGTTAATTATACGCGCCGCC 180
Query 139 TCCTCAGACGACTCACAGTCAGTCGAAAACCAAACTCTAGAGGTCCTCGAATGGCGTGCT 198
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 TCCTCAGACGACTCACAGTCAGTCGAAAACCAAACTCTAGAAGTCCTCGAATGGCGTGCC 240
Query 199 CTCTGCAATCAGCTCGCTCCATTCGCCTCCACAACCATGGGACTTTCCGCCACCAAAAAC 258
||||||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 241 CTCTGCAATCAGCTCTCTCCGTTCGCTTCCACAACCATGGGCCTTTCCGCCACCAAAAAC 300
Query 259 GCCGAAATTCCGGTGGGAAATTCGCCGGAAGAGAGCAGGAATCTCCTTGACGAGACGGCG 318
|||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| |
Sbjct 301 GCCGAAATTCCGGTGGGAAACTCGCCGGAAGAAAGCAGGAATCTCCTTAACGAGACCTCA 360
Query 319 GCTGCGTTAGCAGCTATGGAGAAGATGGAATCGC-AGCGATTAGGTCTTTCTGAGATCCA 377
||||| ||||| |||||||||| |||| |||||| || |||||||||||||||| |||||
Sbjct 361 GCTGCATTAGCTGCTATGGAGATGATGAAATCGCGAG-GATTAGGTCTTTCTGAAATCCA 419
Query 378 AGACTTGTCTGATATCGTTGAGCGTGCTGTGGCCGGTCAATTGCTTACCGTTAGAGAGCT 437
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 420 AGACTTGTCTGATATCGTTGAGCGTGCTGTGTCCGGTCAATTGCTTACCGTTAGAGAACT 479
Query 438 CTGCT-CTGTTCGAAGCACGTTAATGGCGGCTACATCAGTGTTTCAGAAACTCCGAAAAG 496
||| | | |||||||||||||||| ||| ||||||||| ||||||||||||||||||||
Sbjct 480 CTG-TACCGTTCGAAGCACGTTAACGGCTGCTACATCAACGTTTCAGAAACTCCGAAAAG 538
Query 497 CAGCCATTAGTGATAAGAGGGTTACTCCACTTGTAGGTTTAGTTCAGGGTTGTGATTTCA 556
|||||||||||||||| ||||||||||||||||||| | || | ||||||||||||||||
Sbjct 539 CAGCCATTAGTGATAACAGGGTTACTCCACTTGTAGATATACTACAGGGTTGTGATTTCA 598
Query 557 AGGATACATTGCAGCAGAAGATTGGATTTTGTATCGACTGCAACATGTCTATGATTCTTG 616
|||||||||| |||||||||||| | |||||||| |||||||||||| ||||||||||||
Sbjct 599 AGGATACATTACAGCAGAAGATTAGTTTTTGTATAGACTGCAACATGACTATGATTCTTG 658
Query 617 ATAGAGCTAGTGAAGATTTAGAGATTATAAGATCTGAACGGAGGAGAAACATGGAGAAAT 676
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 659 ATAGAGCTAGTGAAGATTTAGAGATTATAAGATCTGAACGGAGGAGAAACATGGAGAATT 718
Query 677 TGGATTCTCTTTTGAAGCAGATATCAACTCAGATTTTTC-AGGCTGGGGGGATTGATAGG 735
||||||||||||||||| | ||||||||| ||||||||| | |||||||||||| | | |
Sbjct 719 TGGATTCTCTTTTGAAGAAAATATCAACTAAGATTTTTCTA-GCTGGGGGGATTAACAAG 777
Query 736 CCCTTGATAACGCAGCGCAGATCAAGGATGTGTGTAGCTATTAGAGCGACGCACAAAAGT 795
|| |||||||||||| | ||||||||||||||||||||||||||||| || |||||||||
Sbjct 778 CCTTTGATAACGCAGAGGAGATCAAGGATGTGTGTAGCTATTAGAGCTACACACAAAAGT 837
Query 796 TTACTTCCAGGTGGTGTTGTTTTAAGTGTTAGTAGCTCAAGGGCAACGTGCTATATAGAA 855
|||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct 838 TTACTTCCAGGTGGTGTTGTTTTAAGTGTTAGTAGCTCTAGGGCAACATGCTTTATAGAA 897
Query 856 CCGAAAGAGGCAGTGGAGCTTAATAACATGGAAGTGAGGCATGCAAACTCGGAGAAAGCT 915
|||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct 898 CCGAAAGAGGCAGTGGAGCTTAATAATATGGAAGTGAGACATGCGAACTCCGAGAAAGCT 957
Query 916 GAGGAAATGGCAATTTTGAGCATTTTGACATCTGAAGT-GTCAACGGCGCAGAAG-GATA 973
||||||||||| ||||||||||||||||||||||| || || | ||||||| || || |
Sbjct 958 GAGGAAATGGCGATTTTGAGCATTTTGACATCTGAGGTGGT-GATGGCGCAG-AGAGAGA 1015
Query 974 TATTGCATTTGTTGGATAGAATACTAGAACTTGACATTGCTTTTGCAAGAGCATCTCATG 1033
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1016 TATTGCATTTGTTGGATAGAATATTAGAACTTGACATTGCTTTTGCAAGAGCATCACATG 1075
Query 1034 CAAAATGGATGAATGGTGTCTATCCTAACGTAACTTCAGAACACACTAAAACAGCGGGTT 1093
|||| ||||| |||||||||||||| |||||||||||||||||||| |||||| |
Sbjct 1076 CAAATTGGATTAATGGTGTCTATCCCAACGTAACTTCAGAACACACAAAAACA-C----- 1129
Query 1094 TGGGTGGAGACCATAAATCATTATCTGTAGACATTGATTCTGCGCAGCACCCGCTACTTC 1153
|| | | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1130 ----CGG-G---------C-TTAGCTGTAGACATTGATTCTGCGCAGCACCCGCTACTTC 1174
Query 1154 TTGGTTCAGTATTAGGCAGCCCAAATGATGGA-ATGGTTTTTCCTGTGCCAATAGACATT 1212
||||||||||||||||||||||||||| |||| | |||| ||||||||| ||||||||
Sbjct 1175 TTGGTTCAGTATTAGGCAGCCCAAATGGTGGAGACA-TTTTCCCTGTGCCAGTAGACATT 1233
Query 1213 AAAGTTGAAAGCAGAGCCAAAGTAGTCGTCATCTCGGGTCCAAACACAGGAGGAAAGACT 1272
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 AAAGTTGAAAGCAGTGCCAAAGTAGTCGTCATCTCGGGTCCAAACACAGGAGGAAAGACC 1293
Query 1273 GCTTTATTAAAGACATTGGGATTAATATCTCTTATGTCCAAGTCGGGGATGTATTTGCCT 1332
||||| |||||||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 1294 GCTTTGTTAAAGACATTGGGATTATTGTCTCTTATGTCCAAGTCCGGGATGTATTTGCCT 1353
Query 1333 GCTAAGAATTGCCCAAGGTTGCCTTGGTTTGATTTTATTCTGGCAGATATCGGGGATCCG 1392
|||||||| |||||||||||||||||||||||| |||||||||| || || || |||||
Sbjct 1354 GCTAAGAACTGCCCAAGGTTGCCTTGGTTTGATCTTATTCTGGCTGACATTGGAGATCCT 1413
Query 1393 CAGTCTTTGGAGCAAAGTCTCTCAACCTTTAGTGGCCACATCTCACGGATACGTCAGATA 1452
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1414 CAGTCTTTGGAGCAAAGTCTTTCAACCTTTAGTGGCCACATCTCACGGATACGACAGATA 1473
Query 1453 CTTGACATTGCTTCAGAAAATTCGCTTGTCCTACTAGACGAAATTTGTAGTGGAACTGAT 1512
||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||
Sbjct 1474 CTTGACATTGCTTCAGAAAATTCACTTGTCTTACTAGACGAAATATGTAGTGGAACTGAT 1533
Query 1513 CCTTCAGAAGGGGTTGCACTTGCTACTAGTATCCTACAATATATTAAAAACCGTGTTAAT 1572
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1534 CCTTCAGAAGGGGTTGCACTTGCTACTAGCATCCTACAGTATATTAAAAACCGTGTTAAT 1593
Query 1573 GTGGCTGTTGTGTCAACACATTACGGTGACTTAAGTCGCCTGAAGGATAATGAGCCTCAA 1632
||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 1594 GTGGCAGTTGTATCAACACATTACGGTGACTTAAGTCGCTTGAAGGATAATGAACCTCGA 1653
Query 1633 TTCCAAAATGCTGCAATGGAGTTCTCCATGGAAACTTTGCAGCCTACATTCCGAGTACTC 1692
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1654 TTCCAAAATGCTGCAATGGAGTTCTCCATGGAAACTTTGCAGCCTACATTTCGAGTACTC 1713
Query 1693 TGGGGAAGTACTGGTCTATCAAATGCATTGACAGTAGCTAAGTCCATTGGTTTCAATACA 1752
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1714 TGGGGAAGTACTGGTCTATCAAATGCATTGAGAGTAGCTAAGTCCATTGGTTTCAATAAA 1773
Query 1753 GGAATATTAGAGAATGCACATAAATGGACAGAGAAATTAAATCCGGAGCAGGATGTAGAG 1812
|||||||||||||||| ||||| ||||| |||||||| ||||| |||||||||||||||
Sbjct 1774 AGAATATTAGAGAATGCGCATAAGTGGACGGAGAAATTGAATCCCGAGCAGGATGTAGAG 1833
Query 1813 CGGAAAGGCTCACTCTTTCAGTCCCTTGTGGAAGAAAGAAATAAGCTAAAGCTTCAGGCA 1872
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1834 CGGAAAGGCTCACTCTTTCAGTCCCTTATGGAAGAAAGAAATAAACTAAAGCTTCAGGCA 1893
Query 1873 TCTAAGACTGAAGCTTTTCATAGAGACTTAATGAACCTTTACCACGAGCTTGAGCATGAG 1932
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1894 ACTAAGACTGCAGCTTTTCATAGAGACTTAATGAACCTTTACCACGAGCTTGAGCATGAG 1953
Query 1933 TCGCATGATCTTGAAAAACGTGAGAGGGCTCTTCTGAAGAAAGAGACCCAAAAGGTACAA 1992
|||||||||||||| ||||||||||||||||||||||| ||||| || |||||||| |||
Sbjct 1954 TCGCATGATCTTGATAAACGTGAGAGGGCTCTTCTGAAAAAAGAAACGCAAAAGGTGCAA 2013
Query 1993 GAAGATCTGAACTCTGCTAAGTCGAAA-ATGCAGAAACTGGTGGCTGAATTCAAAAGTCA 2051
|||||||| |||||||||||||| ||| ||| ||| ||||||||||||||| |||||||
Sbjct 2014 GAAGATCTAAACTCTGCTAAGTC-AAAGATGGAGAGACTGGTGGCTGAATTTGAAAGTCA 2072
Query 2052 ACTAGAAATCGCTCAAGCTGATCAATACAATTCCTTAATTCTGAAAACCGAAGAGGCAGT 2111
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2073 ACTAGAAATCACTCAAGCTGATCAATACAATTCCTTAATCCTGAAAACCGAAGAGGCAGT 2132
Query 2112 TGCAGAGATTATTGAAGCTTGCTGTCCTGTCGATCCTGATTCCATT-GAAGAACCGTACA 2170
|||||||||||||||||||||||||||| | |||||||||||| || |||||| ||||
Sbjct 2133 TGCAGAGATTATTGAAGCTTGCTGTCCTATGGATCCTGATTCC-TTAGAAGAAGAATACA 2191
Query 2171 GAGACTACTCGCCACAAGCAGGTGAAAAAGTTCTTGTAACTGGACTTGGAGATAAGTTAG 2230
| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2192 GTGACTACTCACCACAAGCTGGTGAAAAAGTTCTTGTAACTGGACTGGGAGATAAGTTAG 2251
Query 2231 GTACTGTTGTGGAAGAACCTGGAGATGATGA-GA--CAGTTCTAGTCCAGCATGGTAAGA 2287
||||||| || |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2252 GTACTGTGGTTGAAGAACCTGGAGATGATGATGATACAGTTCTAGTCCAGCATGGTAAGA 2311
Query 2288 TAAGAGTACGTATAAAGAAAAAGGACATAAAGCCCCTTCCTCGTAGCACAAGTAGCCAAA 2347
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2312 TAAGAGTACGCATAAAGAAAAAGGACATAAAGCCCCTTCCTCGTAGCACAAGTAGCCAAA 2371
Query 2348 CATCCAATCGTTCTATACATTCAAAGAGACAGGTAAACATGAAAGAGCTAGGCAGTGTGT 2407
|||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||
Sbjct 2372 CATCCAATCGTTCTCTACGTTCGAAGAGACAGATAAACATGAAAGAGCTAGGCAGTGTGT 2431
Query 2408 TGCAGATGCAGCAGAGCGAACCAGTGCGGATTCAAACGTCAAAGAACACATTGGATCTAA 2467
|||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2432 TGCAAATGCA--A-AGCGAACCAGTGCGGATTCAAACGTCAAAGAACACATTGGATCTAA 2488
Query 2468 GAGGAATGCGGGCAGAAGAAGCGGTTCACCAGCTAGACATGGCCATATCGGGAAGAGACT 2527
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2489 GAGGAATGCGGGCGGAAGAAGCGGTTCACCAGCTAGACATGGCCATCTCGGGAAGAGACT 2548
Query 2528 CGGGCTCGATCCTCTTTATCATTCATGGAATGGGGACAGGGGTTATAAAGGAGCTGGTGC 2587
||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||| ||||
Sbjct 2549 CGGGCTCGATCCTATTTATTATTCATGGAATGGGGGCAGGCATTATAAAGGAGCTAGTGC 2608
Query 2588 TTGAGAGGTTAAGAAAGCACACTCGTGTCTCAAGGTATGAACAGGCAAATCTTATGAACC 2647
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2609 TTGAGAGGTTAAGAAAGAACACTCGTGTCTCAAGGTATGAACAGGCAAATCCTATGAACC 2668
Query 2648 ATGGATGTACAGTTGCTTACATTAAATGA 2676
|||||||||||||||||||||||||||||
Sbjct 2669 ATGGATGTACAGTTGCTTACATTAAATGA 2697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132892232007
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5