BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907814

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28...   686    0.0  


> AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28630394 
REVERSE LENGTH=1347
Length=1347

 Score =  686 bits (371),  Expect = 0.0
 Identities = 464/507 (92%), Gaps = 13/507 (3%)
 Strand=Plus/Plus

Query  18   TTTACCTGGAGGAAAGGTAATTCCAACGAATAGACAGACAAGAAGAGCACTGAGTAATAT  77
            ||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct  114  TTTACGTGGAGGAAAGGTAATTCCGACGAATGGACAGACAAGAAGGGCACTGAGTAATAT  173

Query  78   AAACAAGAACATCATCGGAGCTCCTGTTTATCCTTCTGCTGTCAACAAGAGACCATTCAC  137
            |||||||||||||||||||||||| || ||||||| ||||||   |||||||||||||||
Sbjct  174  AAACAAGAACATCATCGGAGCTCCGGTCTATCCTTGTGCTGT---CAAGAGACCATTCAC  230

Query  138  ---CAAGAATGGGATATGTAACAAGAAGATTCCA-C---TCCATTGCATCGTCTGGTTAC  190
                || |||||||| |||||||||||||||||| |   |||| ||||||| |  |||||
Sbjct  231  TGAGAAAAATGGGATTTGTAACAAGAAGATTCCACCTGTTCCAGTGCATCGACCAGTTAC  290

Query  191  TAGGTAAATTTGCTGCTCAGTTAGCTGAGAACAATCCCCAAATTCACAAGGAGGAAACCA  250
            |||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||
Sbjct  291  TAGG-AAATTTGCTGCTCAATTAGCTGAGAACAATCTCCAAATCCACAAGGAGGAAACCA  349

Query  251  AGAAACCAGACTTGATTTCGAACGAAACATTAGATAGAATCATAATAGATGTGGAAGAAG  310
            ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct  350  AGAAACCAGACTTGATTTCAAACGAAGCATTAGATAGAATCATAACAGATGTGGAAGAAG  409

Query  311  GAGACTTTATTGAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAAGAGATTGACC  370
            ||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| 
Sbjct  410  GAGACTTTAATGAACCAATGTTTGTTCAACATACTGAAGCAATGCTTGAAGAGATTGACA  469

Query  371  GAATGGAAGGAATTGAAATGGAAGATTCAAATGATATTGATGTTGAAGTAGAAGAGTCTG  430
             ||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct  470  AAATGGAAGGGATTGAAATGCAAGATTCAAATGATATTGATGCTGAAGTAGAAGAGTCTG  529

Query  431  TGATGGATATAGACAGCTGTGACAAGAACAATCCTCTAGT-TGTAGTTGAATACATTGAT  489
            ||||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||
Sbjct  530  TGATGGATATAGACAGCTGTGACAAGAACAATCCTTTA-TCTGTAGTTGAATACATTAAT  588

Query  490  GACATATATTGCTTCTACAAGAAAAAT  516
            |||||||||||||||||||||||||||
Sbjct  589  GACATATATTGCTTCTACAAGAAAAAT  615



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5