BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907825

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02650.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   115    2e-25
  AT3G61260.1 | Symbols:  | Remorin family protein | chr3:2267523...   113    9e-25


> AT3G02650.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr3:568047-570103 FORWARD LENGTH=2057
Length=2057

 Score =  115 bits (62),  Expect = 2e-25
 Identities = 88/100 (88%), Gaps = 3/100 (3%)
 Strand=Plus/Plus

Query  1    ATGGATGCTTATGGTTTGTGGGATTTGGTTAAGGAGATTGGTGAGAAGGAGAATGGTAGT  60
            |||||||||||||||||||||||||||||||||||||| |||||||| |||| | || ||
Sbjct  710  ATGGATGCTTATGGTTTGTGGGATTTGGTTAAGGAGATAGGTGAGAAAGAGAGTTGTGGT  769

Query  61   GtttttttGAACTTAGAGATTTTGAATGAATTGATTGCCT  100
            |||||   ||| || ||||| ||||||||| |||||||||
Sbjct  770  GTTTT---GAATTTGGAGATATTGAATGAACTGATTGCCT  806


> AT3G61260.1 | Symbols:  | Remorin family protein | chr3:22675238-22676788 
REVERSE LENGTH=891
Length=891

 Score =  113 bits (61),  Expect = 9e-25
 Identities = 66/68 (97%), Gaps = 1/68 (1%)
 Strand=Plus/Plus

Query  258  GTATGCAGAGAGGATGAAGAATAAGGTTGCAGCGATTCACAAGGAAGCAGAAGAGAGAAG  317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  558  GTATGCAGAGAGGATGAAGAATAAGGTTGCAGCGATTCACAAGGAAGCAGAAGAGAGAAG  617

Query  318  A-CATTGA  324
            | || |||
Sbjct  618  AGCAATGA  625



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5