BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg907863 Length=729 Score E Sequences producing significant alignments: (Bits) Value ATCG00720.1 | Symbols: PETB | photosynthetic electron transfer ... 1168 0.0 AT1G33785.1 | Symbols: | Cytochrome B6, pseudogene, similar to... 200 1e-50 > ATCG00720.1 | Symbols: PETB | photosynthetic electron transfer B | chrC:74841-76292 FORWARD LENGTH=648 Length=648 Score = 1168 bits (632), Expect = 0.0 Identities = 639/642 (99%), Gaps = 1/642 (0%) Strand=Plus/Plus Query 89 AAA-TTTATGATTGGTTCGAAGAACGCCTTGAGATTCAGGCGATTGCAGATGATATAACT 147 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 7 AAAGTTTATGATTGGTTCGAAGAACGTCTTGAGATTCAGGCGATTGCAGATGATATAACT 66 Query 148 AGTAAATATGTTCCTCCGCATGTCAACATATTTTATTGTCTAGGCGGAATTACCCTTACT 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 AGTAAATATGTTCCTCCGCATGTCAACATATTTTATTGTCTAGGCGGAATTACCCTTACT 126 Query 208 TGTTTTTTAGTACAAGTAGCTACGGGATTTGCTATGACTTTTTATTACCGTCCAACCGTT 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TGTTTTTTAGTACAAGTAGCTACGGGATTTGCTATGACTTTTTATTACCGTCCAACCGTT 186 Query 268 ACTGAAGCTTTTGCTTCTGTTCAATATATAATGACTGAAGCTAACTTTGGTTGGTTAATC 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 187 ACTGAAGCTTTTGCTTCTGTTCAATATATAATGACTGAAGCTAACTTTGGTTGGTTAATC 246 Query 328 CGATCAGTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGATGATCCTGCACGTATTT 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 247 CGATCAGTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGATGATCCTGCACGTATTT 306 Query 388 CGTGTATACCTCACCGGTGGTTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTG 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 CGTGTATACCTCACCGGTGGTTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTG 366 Query 448 GTTCTGGGTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAA 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 367 GTTCTGGGTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAA 426 Query 508 ATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCTGACGCTATTCCGGTAATAGGA 567 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 427 ATTGGTTATTGGGCGGTCAAAATTGTAACAGGTGTACCTGACGCTATTCCGGTAATAGGA 486 Query 568 TCACCTCTTGTAGAATTATTACGCGGAAGTGCTAGTGTTGGACAATCCACTTTGACTCGT 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 487 TCACCTCTTGTAGAATTATTACGCGGAAGTGCTAGTGTTGGACAATCCACTTTGACTCGT 546 Query 628 TTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACGGCCGTCTTTATGTTAATGCAT 687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 TTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACGGCCGTCTTTATGTTAATGCAT 606 Query 688 TTCCTAATGATACGTAAGCAAGGTATTTCTGGTCCCTTATAA 729 |||||||||||||||||||||||||||||||||||||||||| Sbjct 607 TTCCTAATGATACGTAAGCAAGGTATTTCTGGTCCCTTATAA 648 > AT1G33785.1 | Symbols: | Cytochrome B6, pseudogene, similar to Cytochrome B6. (Mouse-ear cress) {Arabidopsis thaliana}; blastp match of 61% identity and 7.1e-17 P-value to GP|2959637|gb|AAC05628.1||AF001491 cytochrome b6 {Prochlorococcus marinus str. MIT 9303} | chr1:12255360-12256256 REVERSE LENGTH=897 Length=897 Score = 200 bits (108), Expect = 1e-50 Identities = 170/199 (85%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 408 TTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTGGTTCTGGGTGTATTGACCGC 467 ||||| ||||||| |||||||| || |||||||| ||||||| |||||||||||||||| Sbjct 483 TTTTAGTAAACCTCACGAATTAATTTCGGTTACTGATGTGGTTTTGGGTGTATTGACCGC 542 Query 468 ATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAAATTGGTTATTG-------GG 520 |||||||||||||||| |||||||||||| || ||||||||| |||||||| || Sbjct 543 ATCTTTTGGTGTAACAAGTTATTCTTTACATTAGGATCAAATAGGTTATTGCCTTATTGG 602 Query 521 -CAGTCAAAATTGTAACAGGTGTACCTGACGCTATTCCGGTAATAGGATCACCTCTTGTA 579 |||| |||||||||||| |||| ||| ||||||||||||||| || |||||||||| Sbjct 603 GCAGTAAAAATTGTAACATATGTATTTGATGCTATTCCGGTAATAATATTACCTCTTGTA 662 Query 580 GAATTATTACGCGGAAGTG 598 |||||||||||| |||||| Sbjct 663 GAATTATTACGCAGAAGTG 681 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35364839488 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5