BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907863
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00720.1 | Symbols: PETB | photosynthetic electron transfer ... 1168 0.0
AT1G33785.1 | Symbols: | Cytochrome B6, pseudogene, similar to... 200 1e-50
> ATCG00720.1 | Symbols: PETB | photosynthetic electron transfer
B | chrC:74841-76292 FORWARD LENGTH=648
Length=648
Score = 1168 bits (632), Expect = 0.0
Identities = 639/642 (99%), Gaps = 1/642 (0%)
Strand=Plus/Plus
Query 89 AAA-TTTATGATTGGTTCGAAGAACGCCTTGAGATTCAGGCGATTGCAGATGATATAACT 147
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 7 AAAGTTTATGATTGGTTCGAAGAACGTCTTGAGATTCAGGCGATTGCAGATGATATAACT 66
Query 148 AGTAAATATGTTCCTCCGCATGTCAACATATTTTATTGTCTAGGCGGAATTACCCTTACT 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 AGTAAATATGTTCCTCCGCATGTCAACATATTTTATTGTCTAGGCGGAATTACCCTTACT 126
Query 208 TGTTTTTTAGTACAAGTAGCTACGGGATTTGCTATGACTTTTTATTACCGTCCAACCGTT 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TGTTTTTTAGTACAAGTAGCTACGGGATTTGCTATGACTTTTTATTACCGTCCAACCGTT 186
Query 268 ACTGAAGCTTTTGCTTCTGTTCAATATATAATGACTGAAGCTAACTTTGGTTGGTTAATC 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 ACTGAAGCTTTTGCTTCTGTTCAATATATAATGACTGAAGCTAACTTTGGTTGGTTAATC 246
Query 328 CGATCAGTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGATGATCCTGCACGTATTT 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 CGATCAGTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGATGATCCTGCACGTATTT 306
Query 388 CGTGTATACCTCACCGGTGGTTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTG 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CGTGTATACCTCACCGGTGGTTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTG 366
Query 448 GTTCTGGGTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAA 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GTTCTGGGTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAA 426
Query 508 ATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCTGACGCTATTCCGGTAATAGGA 567
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 ATTGGTTATTGGGCGGTCAAAATTGTAACAGGTGTACCTGACGCTATTCCGGTAATAGGA 486
Query 568 TCACCTCTTGTAGAATTATTACGCGGAAGTGCTAGTGTTGGACAATCCACTTTGACTCGT 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 TCACCTCTTGTAGAATTATTACGCGGAAGTGCTAGTGTTGGACAATCCACTTTGACTCGT 546
Query 628 TTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACGGCCGTCTTTATGTTAATGCAT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACGGCCGTCTTTATGTTAATGCAT 606
Query 688 TTCCTAATGATACGTAAGCAAGGTATTTCTGGTCCCTTATAA 729
||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TTCCTAATGATACGTAAGCAAGGTATTTCTGGTCCCTTATAA 648
> AT1G33785.1 | Symbols: | Cytochrome B6, pseudogene, similar
to Cytochrome B6. (Mouse-ear cress) {Arabidopsis thaliana};
blastp match of 61% identity and 7.1e-17 P-value to GP|2959637|gb|AAC05628.1||AF001491
cytochrome b6 {Prochlorococcus marinus
str. MIT 9303} | chr1:12255360-12256256 REVERSE LENGTH=897
Length=897
Score = 200 bits (108), Expect = 1e-50
Identities = 170/199 (85%), Gaps = 8/199 (4%)
Strand=Plus/Plus
Query 408 TTTTAAAAAACCTCGCGAATTAACTTGGGTTACTGGTGTGGTTCTGGGTGTATTGACCGC 467
||||| ||||||| |||||||| || |||||||| ||||||| ||||||||||||||||
Sbjct 483 TTTTAGTAAACCTCACGAATTAATTTCGGTTACTGATGTGGTTTTGGGTGTATTGACCGC 542
Query 468 ATCTTTTGGTGTAACAGGTTATTCTTTACCTTGGGATCAAATTGGTTATTG-------GG 520
|||||||||||||||| |||||||||||| || ||||||||| |||||||| ||
Sbjct 543 ATCTTTTGGTGTAACAAGTTATTCTTTACATTAGGATCAAATAGGTTATTGCCTTATTGG 602
Query 521 -CAGTCAAAATTGTAACAGGTGTACCTGACGCTATTCCGGTAATAGGATCACCTCTTGTA 579
|||| |||||||||||| |||| ||| ||||||||||||||| || ||||||||||
Sbjct 603 GCAGTAAAAATTGTAACATATGTATTTGATGCTATTCCGGTAATAATATTACCTCTTGTA 662
Query 580 GAATTATTACGCGGAAGTG 598
|||||||||||| ||||||
Sbjct 663 GAATTATTACGCAGAAGTG 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5