BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907873

Length=879
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00500.1 | Symbols: ACCD | acetyl-CoA carboxylase carboxyl t...   857    0.0  


> ATCG00500.1 | Symbols: ACCD | acetyl-CoA carboxylase carboxyl 
transferase subunit beta | chrC:57075-58541 FORWARD LENGTH=1467
Length=1467

 Score =  857 bits (464),  Expect = 0.0
 Identities = 468/470 (99%), Gaps = 0/470 (0%)
 Strand=Plus/Plus

Query  410   GGGGTAGTATGGGATCCGTAGTAGGCGAAAAAATAACTCGTTTGATCGAGTATGCTACCA  469
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  998   GGGGTAGTATGGGATCCGTAGTAGGCGAAAAAATAACTCGTTTGATCGAGTATGCTACCA  1057

Query  470   ATCAATGTTTACCTCTTATTTTAGTGTGTTCTTCCGGAGGAGCACGAATGCAAGAAGGAA  529
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1058  ATCAATGTTTACCTCTTATTTTAGTGTGTTCTTCCGGAGGAGCACGAATGCAAGAAGGAA  1117

Query  530   GTTTAAGTTTGATGCAAATGGCTAAAATTTCTTCGGTTTTATGTGATTATCAATCAAGTA  589
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1118  GTTTAAGTTTGATGCAAATGGCTAAAATTTCTTCGGTTTTATGTGATTATCAATCAAGTA  1177

Query  590   AAAAGTTATTCTATATATCAATTCTTACATCTCCTACTACCGGTGGAGTGACAGCTAGTT  649
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1178  AAAAGTTATTCTATATATCAATTCTTACATCTCCTACTACCGGTGGAGTGACAGCTAGTT  1237

Query  650   TTGGTATGTTGGGGGATATCATTATTGCCGAACCCTATGCCTATATTGCATTTGCGGGTA  709
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1238  TTGGTATGTTGGGGGATATCATTATTGCCGAACCCTATGCCTATATTGCATTTGCGGGTA  1297

Query  710   AAAGAGTAATTGAACAAACATTGAAAAAAGCCGTGCCTGAAGGTTCACAAGCGGCTGAAT  769
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1298  AAAGAGTAATTGAACAAACATTGAAAAAAGCCGTGCCTGAAGGTTCACAAGCGGCTGAAT  1357

Query  770   CTTTATTACGTAAGGGCTTATTGGATGCAATTGTACCACGTAATCTTTTAAAAGGTGTTC  829
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1358  CTTTATTACGTAAGGGCTTATTGGATGCAATTGTACCACGTAATCTTTTAAAAGGTGTTC  1417

Query  830   TGAGCGAGTTATTTCAGCTCCATGCtttttttCCGTTGAACAAAAATTAA  879
             |||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct  1418  TGAGCGAGTTATTTCAGCTCCATGCTTTTTTTCCTTTGAACACAAATTAA  1467


 Score =  372 bits (201),  Expect = 4e-102
 Identities = 239/255 (94%), Gaps = 12/255 (5%)
 Strand=Plus/Plus

Query  1    ATGGAAAAATCGTGGTTCAATTTTATGTTTTCTAAGGGAGAATTGGAATACAGAGGCGAG  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGGAAAAATCGTGGTTCAATTTTATGTTTTCTAAGGGAGAATTGGAATACAGAGGTGAG  60

Query  61   CTAAGTAAAGCAATGGATAGTTTTGCTCCTGGTGAAAAGACTACTATAAGTCAAGACCAT  120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  61   CTAAGTAAAGCAATGGATAGTTTTGCTCCTGGTGAAAAGACTACTATAAGTCAAGACCGT  120

Query  121  TTTATATATGATATGGATAAAAACTTTTATGGTTGGGGTGAGCGTTCTAGTTATTC--C-  177
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  | 
Sbjct  121  TTTATATATGATATGGATAAAAACTTTTATGGTTGGGATGAGCGTTCTAGTTATTCTTCT  180

Query  178  A---AT---AAT---GTTGATCTTTTAGTTAGCTCCAAGGACATTCGCAATTTCATATCG  228
            |   ||   |||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AGTTATTCCAATAATGTTGATCTTTTAGTTAGCTCCAAGGACATTCGCAATTTCATATCG  240

Query  229  GATGATACCTTTTTT  243
            ||||| |||||||||
Sbjct  241  GATGACACCTTTTTT  255


 Score =  303 bits (164),  Expect = 1e-81
 Identities = 166/167 (99%), Gaps = 0/167 (0%)
 Strand=Plus/Plus

Query  244  AAAGTCAAAATGAATGTTTGTGAACAATGTGGACATTATTTGAAAATGAGTAGTTCAGAG  303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  721  AAAGTCAAAATGAATGTTTGTGAACAATGTGGACATTATTTGAAAATGAGTAGTTCAGAA  780

Query  304  AGAATCGAGCTTTCGATTGATCCGGGTACTTGGAATCCTATGGATGAAGACATGGTCTCT  363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  781  AGAATCGAGCTTTCGATTGATCCGGGTACTTGGAATCCTATGGATGAAGACATGGTCTCT  840

Query  364  GCGGATCCCATTAAATTTCATTCGAAGGAGGAACCTTATAAAAACCG  410
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  841  GCGGATCCCATTAAATTTCATTCGAAGGAGGAACCTTATAAAAACCG  887



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42899961538


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5