BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907875
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00480.1 | Symbols: ATPB, PB | ATP synthase subunit beta | c... 2682 0.0
AT1G55090.1 | Symbols: | carbon-nitrogen hydrolase family prot... 124 2e-27
AT1G55100.1 | Symbols: | transposable element gene | chr1:2055... 124 2e-27
> ATCG00480.1 | Symbols: ATPB, PB | ATP synthase subunit beta |
chrC:52660-54156 REVERSE LENGTH=1497
Length=1497
Score = 2682 bits (1452), Expect = 0.0
Identities = 1482/1497 (99%), Gaps = 0/1497 (0%)
Strand=Plus/Plus
Query 1 ATGAGAACAAATCCTACTACTTCGGATCCAGAGGTTTCGATACGTGaaaaaaaaaaCCTG 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAACAAATCCTACTACTTCAAATCCAGAGGTTTCGATACGTGAAAAAAAAAACCTG 60
Query 61 GGACGTATCGCTCAAATCATTGGTCCGGTACTGGATGTAGCCTTTCCCCCGGGCAAAATG 120
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GGACGTATCGCCCAAATCATTGGTCCGGTACTGGATGTAGCCTTCCCCCCGGGCAAAATG 120
Query 121 CCTAATATTTACAATGCTCTGGTGGTTAAGGGTCGAGATACTCTTGGTCAAGAAATTAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTAATATTTACAATGCTCTGGTGGTTAAGGGTCGAGATACTCTTGGTCAAGAAATTAAT 180
Query 181 GTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGT 240
Query 241 GCGACAGAGGGTTTAAAGAGAGGAATGGACGTGGTTGATATGGGAAATCCTCTAAGTGTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCGACAGAGGGTTTAAAGAGAGGAATGGACGTGGTTGATATGGGAAATCCTCTAAGTGTT 300
Query 301 CCAGTCGGCGGAGCGACTCTAGGACGAATTTTCAACGTGCTTGGGGAACCCGTTGATAAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CCAGTCGGCGGAGCGACTCTAGGACGAATTTTCAACGTGCTTGGGGAACCCGTTGATAAT 360
Query 361 TTAGGTCCTGTCGATACTCGCACAACATCTCCTATCCATAAATCCGCGCCTGCTTTTATA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTAGGTCCTGTCGATACTCGCACAACATCTCCTATCCATAAATCCGCGCCTGCTTTTATA 420
Query 421 CAATTAGATACAAAATTATCAATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTGGCC 480
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAATTAGATACAAAATTATCGATTTTTGAAACAGGAATTAAAGTAGTAGATCTTTTGGCC 480
Query 481 CCTTATCGTCGTGGGGGAAAAATTGGACTATTCGGTGGGGCTGGCGTGGGTAAAACAGTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTTATCGTCGTGGGGGAAAAATTGGACTATTCGGTGGGGCTGGCGTGGGTAAAACAGTA 540
Query 541 CTAATTATGGAATTGATCAACAACATTGCTAAAGCTCATGGTGGTGTATCCGTATTTGGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTAATTATGGAATTGATCAACAACATTGCTAAAGCTCATGGTGGTGTATCCGTATTTGGT 600
Query 601 GGAGTAGGCGAACGGACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCTGGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGAGTAGGCGAACGGACTCGTGAAGGAAATGATCTTTACATGGAAATGAAAGAATCTGGA 660
Query 661 GTCATTAATGAACAAAATCTTGCGGAATCCAAAGTGGCCCTAGTCTATGGTCAGATGAAT 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 GTCATTAATGAACAAAATCTTGCGGAATCCAAAGTGGCCCTAGTTTATGGTCAGATGAAT 720
Query 721 GAACCACCAGGAGCTCGTATGAGAGTTGGTCTGACTGCCTTAACTATGGCAGAATATTTC 780
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAACCGCCAGGAGCTCGTATGAGAGTTGGTCTGACTGCCTTAACTATGGCAGAATATTTC 780
Query 781 CGAGATGTTAATGAGCAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTCGTACAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGAGATGTTAATGAGCAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTCGTACAA 840
Query 841 GCAGGATCCGAGGTATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCAGGATCCGAGGTATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCC 900
Query 901 ACCCTTAGTACCGAAATGGGTACTTTACAAGAAAGAATTACTTCTACAAAAAAGGGGTCC 960
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 ACCCTTAGTACCGAAATGGGTACTTTACAAGAAAGAATTACTTCTACGAAAAAGGGGTCC 960
Query 961 ATAACCTCTATTCAAGCAGTTTATGTACCTGCAGATGATTTGACTGACCCCGCTCCTGCC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 961 ATAACCTCTATTCAAGCAGTTTATGTACCTGCAGATGATTTGACTGACCCCGCACCTGCC 1020
Query 1021 ACCACATTTGCACATTTAGATGCGACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACCACATTTGCACATTTAGATGCGACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGT 1080
Query 1081 ATCTATCCAGCGGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGAATCGTT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ATCTATCCAGCGGTAGATCCTTTAGATTCAACGTCAACTATGCTACAACCTCGAATCGTT 1140
Query 1141 GGCGAGGAACATTATGAAACTGCGCAACAAGTAAAGCAAACTTTACAACGTTACAAGGAG 1200
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1141 GGCGAGGAACATTATGAAACTGCGCAACAAGTAAAACAAACTTTACAACGTTACAAGGAG 1200
Query 1201 CTTCAGGACATTATAGCTATCCTGGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACC 1260
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 CTTCAGGACATTATAGCTATCCTGGGGTTGGATGAATTATCCGAAGAGGATCGCTTAACC 1260
Query 1261 GTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTA 1320
Query 1321 TTTACAGGTTCTCCGGGAAAATATGTTGGTCTAGCGGAAACAATTAGAGGGTTTAAATTG 1380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1321 TTTACAGGTTCTCCGGGAAAATATGTTGGTCTAGCGGAAACAATTAGAGGGTTTAATTTG 1380
Query 1381 ATCCTTTCCGGAGAATTTGATTCTCTTCCTGAACAGGCCTTTTACTTAGTGGGTAACATC 1440
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1381 ATCCTTTCCGGAGAATTTGATTCTCTTCCCGAACAGGCCTTTTACTTAGTGGGTAACATC 1440
Query 1441 GATGAAGCTACTGCGAAGGCTACAAACTTAGAAATGGAGAGTAAATTGAAGAAATGA 1497
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1441 GATGAAGCTACTGCGAAGGCTACGAACTTAGAAATGGAGAGTAAATTGAAGAAATGA 1497
> AT1G55090.1 | Symbols: | carbon-nitrogen hydrolase family protein
| chr1:20554352-20558529 FORWARD LENGTH=2762
Length=2762
Score = 124 bits (67), Expect = 2e-27
Identities = 111/130 (85%), Gaps = 12/130 (9%)
Strand=Plus/Minus
Query 797 AAGACGTACTTCT--ATTTATCGACAATATCTTCCGTTTCGTACAAGCAGGATCCGAGGT 854
||||||||||||| | | || ||||||||||||||||||||||||||||||||||| |
Sbjct 2588 AAGACGTACTTCTACAGTCATAGACAATATCTTCCGTTTCGTACAAGCAGGATCCGA--T 2531
Query 855 ATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCCACCCTTAGTACCGA 914
| ||||||| ||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 2530 -T-------ATTGGGTGGAATGCCTTGTGATGTGGGTTATCAACCCACCCTTAGTACAGA 2479
Query 915 AATGGGTACT 924
||||||||||
Sbjct 2478 AATGGGTACT 2469
> AT1G55100.1 | Symbols: | transposable element gene | chr1:20558235-20559103
REVERSE LENGTH=869
Length=869
Score = 124 bits (67), Expect = 2e-27
Identities = 111/130 (85%), Gaps = 12/130 (9%)
Strand=Plus/Plus
Query 797 AAGACGTACTTCT--ATTTATCGACAATATCTTCCGTTTCGTACAAGCAGGATCCGAGGT 854
||||||||||||| | | || ||||||||||||||||||||||||||||||||||| |
Sbjct 749 AAGACGTACTTCTACAGTCATAGACAATATCTTCCGTTTCGTACAAGCAGGATCCGA--T 806
Query 855 ATCCGCCTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCCACCCTTAGTACCGA 914
| ||||||| ||||||||| || ||||||||||||||||||||||||||| ||
Sbjct 807 -T-------ATTGGGTGGAATGCCTTGTGATGTGGGTTATCAACCCACCCTTAGTACAGA 858
Query 915 AATGGGTACT 924
||||||||||
Sbjct 859 AATGGGTACT 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5