BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907877

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00420.1 | Symbols: NDHJ | NADH dehydrogenase subunit J | ch...   586    6e-167
  AT4G13285.1 | Symbols:  | Pseudogene of ATCG00420 | chr4:773868...   198    3e-50 


> ATCG00420.1 | Symbols: NDHJ | NADH dehydrogenase subunit J | 
chrC:48677-49153 REVERSE LENGTH=477
Length=477

 Score =  586 bits (317),  Expect = 6e-167
 Identities = 317/317 (100%), Gaps = 0/317 (0%)
 Strand=Plus/Plus

Query  1    ATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGC  60

Query  61   TTCGATTATCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTCGATTATCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCT  120

Query  121  GTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGCCTATGATGTGGCA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTAATTTTATATGTATATGGTTACAATTATTTACGTTCGCAATGTGCCTATGATGTGGCA  180

Query  181  CCAGGTGGCCTCTTAGCCAGCGTGTATCATCTTACGAGAATAGAATATGGTGTTAATCAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  CCAGGTGGCCTCTTAGCCAGCGTGTATCATCTTACGAGAATAGAATATGGTGTTAATCAA  240

Query  241  GCGGAAGAAGTCTGCATAAAAGTATTTACTCACAGGAGTAATCCTAGAATTCCATCCGTT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GCGGAAGAAGTCTGCATAAAAGTATTTACTCACAGGAGTAATCCTAGAATTCCATCCGTT  300

Query  301  TTCTGGGTTTGGAAAAG  317
            |||||||||||||||||
Sbjct  301  TTCTGGGTTTGGAAAAG  317


 Score =  220 bits (119),  Expect = 7e-57
 Identities = 121/122 (99%), Gaps = 0/122 (0%)
 Strand=Plus/Plus

Query  317  GAATCACTTATGATAGCCATCCACGACTGAAACGGATCCTAATGCCCGAAAGTTGGATAG  376
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  356  GAATCACTTATGATAGCCATCCACGACTGAAACGGATCCTAATGCCCGAGAGTTGGATAG  415

Query  377  GGTGGCCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATT  436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  416  GGTGGCCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATT  475

Query  437  GA  438
            ||
Sbjct  476  GA  477


> AT4G13285.1 | Symbols:  | Pseudogene of ATCG00420 | chr4:7738680-7738867 
FORWARD LENGTH=188
Length=188

 Score =  198 bits (107),  Expect = 3e-50
 Identities = 150/170 (88%), Gaps = 5/170 (3%)
 Strand=Plus/Plus

Query  96   GCCCGAAGATTGGCATTCTATTGCTGTAATTTTATATGTATATGGTTACAATTATTTACG  155
            ||||||| ||| |||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct  17   GCCCGAAAATTAGCATTCTATTGCTGTAATTTTATATGTATATGATTATAAATATTTACG  76

Query  156  TTCGCAATGTGCCTATGATGTGGCACCA-GGT-GGCCTCTTAGCCAG--CGTGTATCATC  211
            ||||||||||| |||||||||||||| | ||| || ||||||||||   |||||||||||
Sbjct  77   TTCGCAATGTGTCTATGATGTGGCAC-ATGGTTGGTCTCTTAGCCAAAACGTGTATCATC  135

Query  212  TTACGAGAATAGAATATGGTGTTAATCAAGCGGAAGAAGTCTGCATAAAA  261
            |||||||||||| || | |||||||||||| | ||||||| | |||||||
Sbjct  136  TTACGAGAATAGTATGTAGTGTTAATCAAGTGAAAGAAGTTTCCATAAAA  185



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20810848086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5