BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907879

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00360.1 | Symbols: YCF3 | Tetratricopeptide repeat (TPR)-li...   699    0.0  


> ATCG00360.1 | Symbols: YCF3 | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chrC:42584-43751 REVERSE LENGTH=381
Length=381

 Score =  699 bits (378),  Expect = 0.0
 Identities = 380/381 (99%), Gaps = 0/381 (0%)
 Strand=Plus/Plus

Query  127  ATGTCGGCTCAATCTGAAGGAAATTATGCGGAAGCATTACAGAATTATTATGAAGCTATG  186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCGGCTCAATCTGAAGGAAATTATGCGGAAGCATTACAGAATTATTATGAAGCTATG  60

Query  187  CGACTAGAAATTGACCCCTATGATCGAAGTTATATACTCTATAATATAGGCCTTATCCAT  246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CGACTAGAAATTGACCCCTATGATCGAAGTTATATACTCTATAATATAGGCCTTATCCAT  120

Query  247  ACAAGTAATGGGGAACATACCAAAGCTTTAGAATATTATTTTCGGGCATTAGAACGAAAC  306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACAAGTAATGGGGAACATACCAAAGCTTTAGAATATTATTTTCGGGCATTAGAACGAAAC  180

Query  307  CCCTTTTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACCGCGGAGAACAG  366
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  181  CCCTTTTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACCGTGGAGAACAG  240

Query  367  GCCATTCAACAAGGAGATTCTGAAATGGCGGAGGCTTGGTTCGCTCAAGCCGCTGAGTAT  426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GCCATTCAACAAGGAGATTCTGAAATGGCGGAGGCTTGGTTCGCTCAAGCCGCTGAGTAT  300

Query  427  TGGAAACAGGCTATAACGCTTACTCCTGGTAATTATATTGAAGCACAGAATTGGTTGACG  486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TGGAAACAGGCTATAACGCTTACTCCTGGTAATTATATTGAAGCACAGAATTGGTTGACG  360

Query  487  ATCACGAGGCGCTTCGAATAA  507
            |||||||||||||||||||||
Sbjct  361  ATCACGAGGCGCTTCGAATAA  381



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24212858854


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5