BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907883

Length=231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00300.1 | Symbols: YCF9 | YCF9 | chrC:35751-35939 FORWARD L...   339    9e-93


> ATCG00300.1 | Symbols: YCF9 | YCF9 | chrC:35751-35939 FORWARD 
LENGTH=189
Length=189

 Score =  339 bits (183),  Expect = 9e-93
 Identities = 187/189 (99%), Gaps = 0/189 (0%)
 Strand=Plus/Plus

Query  43   ATGACTATTGCTTTCCAATTGGCTGTTTTTGCATTAATTATTACTTCATCAATCTTACTG  102
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACTATTGCTTTCCAATTGGCAGTTTTTGCATTAATTATTACTTCATCAATCTTACTG  60

Query  103  ATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTT  162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  61   ATTAGTGTACCCGTTGTATTTGCGTCTCCTGATGGTTGGTCGAGTAACAAAAATGTTGTA  120

Query  163  TTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAATTCTCTT  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTTTCTGGTACATCTTTATGGATTGGATTAGTCTTCTTGGTGGGTATCCTTAATTCTCTT  180

Query  223  ATCTCTTGA  231
            |||||||||
Sbjct  181  ATCTCTTGA  189



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10405424043


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5