BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907895

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G44000.1 | Symbols:  | Glutathione S-transferase family prot...   660    0.0  


> AT5G44000.1 | Symbols:  | Glutathione S-transferase family protein 
| chr5:17702090-17703963 REVERSE LENGTH=1370
Length=1370

 Score =  660 bits (357),  Expect = 0.0
 Identities = 411/438 (94%), Gaps = 0/438 (0%)
 Strand=Plus/Plus

Query  76    AGGTGCGGGTTTGCGCAGAGCCAAGAAGCGTATGATGGAGCAGTGAATGAACTCTTTAGT  135
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  792   AGGTGCGGGTTTGCGCAGAGCCAAGAAGCGTATGATGGAGCAGTGAATGAACTCTTTAGT  851

Query  136   ACCTTAGATAAGATCGAGGATCACTTGGGTAGTAATAGATACTTGTGTGGAGAAAGGTTA  195
             ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  852   ACCTTAGATGAGATTGAGGATCACTTGGGTAGTAATAGATACTTGTGTGGAGAAAGGTTG  911

Query  196   ACCTTGGCGGATGTGTGTCTCTTTACAACTCTGATTCGTTTTGATCCGGTTTACAACAAT  255
             || ||||| ||||| ||||| || ||||||||||||||||||||| |||||||||||| |
Sbjct  912   ACATTGGCTGATGTATGTCTGTTCACAACTCTGATTCGTTTTGATTCGGTTTACAACATT  971

Query  256   CTATTCAAGTGCACCAAGAAGAAGCTTGTTGAGTACCCGAATCTCTATGGCTATTTGCGG  315
             |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| 
Sbjct  972   CTATTCAAATGCACCAAGAAGAAGCTTGTTGAATACCCAAATCTCTATGGCTATTTGCGC  1031

Query  316   GACATGTACCAGATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGG  375
             || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1032  GAGATTTACCAGATTCCTGGTGTTGCGGCTACTTGTGATATTTCGGCTATAATGGATGGC  1091

Query  376   TACTACAAAACGCTGTTTCCGCTAAACGCAAGTGGAATTCAACCGGCTATTTCTTCATCT  435
             |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  1092  TACTACAAGACGCTGTTTCCGCTAAACGCTAGTGGAATTCAACCGGCCATTTCTTCATCT  1151

Query  436   GGCGATCAAGAATCTCTCTTGAGACCTCATAACCGAGACTTGGTGGGTGAAGCCATGGAA  495
             ||||||||||| ||||||| |||||||||||||||||||||||| ||| ||||||| |||
Sbjct  1152  GGCGATCAAGATTCTCTCTGGAGACCTCATAACCGAGACTTGGTAGGTAAAGCCATTGAA  1211

Query  496   GCACAACTTGCGGTTTAA  513
             ||||| ||| ||||||||
Sbjct  1212  GCACAGCTTTCGGTTTAA  1229



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5