BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907898
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
ATCG00490.1 | Symbols: RBCL | ribulose-bisphosphate carboxylase... 2571 0.0
AT2G07732.1 | Symbols: | Ribulose bisphosphate carboxylase lar... 955 0.0
ATMG00280.1 | Symbols: ORF110A | Ribulose bisphosphate carboxyl... 516 3e-145
AT3G32895.1 | Symbols: | transposable element gene | chr3:1343... 115 1e-24
AT3G22238.1 | Symbols: | pseudogene, putative ribulose 1,5-bis... 102 9e-21
AT3G22234.1 | Symbols: | pseudogene, putative ribulose 1,5-bis... 102 9e-21
> ATCG00490.1 | Symbols: RBCL | ribulose-bisphosphate carboxylases
| chrC:54958-56397 FORWARD LENGTH=1440
Length=1440
Score = 2571 bits (1392), Expect = 0.0
Identities = 1424/1440 (99%), Gaps = 0/1440 (0%)
Strand=Plus/Plus
Query 1 ATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGAGTAT 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTCACCACAAACAGAGACTAAAGCAAGTGTTGGGTTCAAAGCTGGTGTTAAAGAGTAT 60
Query 61 AAATTGACTTATTATACTCCTGAATATGAAACCAAGGATACTGATATCTTGGCAGCATTC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATTGACTTACTATACTCCTGAATATGAAACCAAGGATACTGATATCTTGGCAGCATTC 120
Query 121 CAAGTAACTCCTCAACCTGGAGTTCCACCTGAAGAAGCAGGGGCTGCGGTAGCTGCTGAA 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGAGTAACTCCTCAACCTGGAGTTCCACCTGAAGAAGCAGGGGCTGCGGTAGCTGCTGAA 180
Query 181 TCTTCTACTGGTACATGGACAACTGTATGGACCGATGGGCTTACCAGCCTTGATCGTTAC 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TCTTCTACTGGTACATGGACAACTGTGTGGACCGATGGGCTTACCAGCCTTGATCGTTAC 240
Query 241 AAAGGACGATGCTACCACTTCGAGCCCGTTCCAGGAGAAGAAACTCAATTTATTGCGTAT 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGGACGATGCTACCACATCGAGCCCGTTCCAGGAGAAGAAACTCAATTTATTGCGTAT 300
Query 301 GTAGCTTACCCCTTAGACCTTTTTGAAGAAGGTTTGGTTACTAACATGTTTACCTCGATT 360
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 GTAGCTTATCCCTTAGACCTTTTTGAAGAAGGTTCGGTTACTAACATGTTTACCTCGATT 360
Query 361 GTGGGTAATGTATTTGGGTTCAAAGCCCTGGCTGCTCTACGTCTAGAGGATCTGCGAATC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGGGTAATGTATTTGGGTTCAAAGCCCTGGCTGCTCTACGTCTAGAGGATCTGCGAATC 420
Query 421 CCTCCTGCTTATACTAAAACTTTCCAAGGACCACCTCATGGTATCCAAGTTGAAAGAGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTCCTGCTTATACTAAAACTTTCCAAGGACCACCTCATGGTATCCAAGTTGAAAGAGAT 480
Query 481 AAATTGAACAAGTATGGACGTCCCCTATTAGGATGTACTATTAAACCAAAATTGGGGTTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AAATTGAACAAGTATGGACGTCCCCTATTAGGATGTACTATTAAACCAAAATTGGGGTTA 540
Query 541 TCCGCGAAGAACTATGGTAGAGCAGTTTATGAATGTCTACGTGGTGGACTTGATTTTACC 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCCGCGAAAAACTATGGTAGAGCAGTTTATGAATGTCTACGTGGTGGACTTGATTTTACC 600
Query 601 AAAGATGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAAGATGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTT 660
Query 661 TGTGCCGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAAGGGCATTATTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGTGCCGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAAGGGCATTATTTG 720
Query 721 AATGCTACTGCGGGTACATGCGAAGAAATGATCAAAAGAGCTGTATTTGCCAGAGAATTG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AATGCTACTGCGGGTACATGCGAAGAAATGATCAAAAGAGCTGTATTTGCCAGAGAATTG 780
Query 781 GGAGTTCCTATCGTAATGCATGACTACTTAACAGGGGGATTCACCGCAAATACTAGTTTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGAGTTCCTATCGTAATGCATGACTACTTAACAGGGGGATTCACCGCAAATACTAGTTTG 840
Query 841 GCTCATTATTGCCGAGATAATGGCCTACTTCTTCACATCCACCGTGCAATGCACGCTGTT 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCTCATTATTGCCGAGATAATGGCCTACTTCTTCACATCCACCGTGCAATGCACGCTGTT 900
Query 901 ATTGATAGACAGAAGAATCATGGTATGCACTTCCGTGTACTAACTAAAGCTTTACGTCTA 960
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 901 ATTGATAGACAGAAGAATCATGGTATGCACTTCCGTGTACTAGCTAAAGCTTTACGTCTA 960
Query 961 TCTGGTGGAGATCATGTTCACGCGGGTACAGTAGTAGGTAAACTTGAAGGAGACAGGGAG 1020
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCTGGTGGAGATCATATTCACGCGGGTACAGTAGTAGGTAAACTTGAAGGAGACAGGGAG 1020
Query 1021 TCAACTTTGGGCTTTGTTGATTTACTGCGCGATGATTATGTTGAAAAAGATCGAAGCCGC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCAACTTTGGGCTTTGTTGATTTACTGCGCGATGATTATGTTGAAAAAGATCGAAGCCGC 1080
Query 1081 GGTATCTTTTTCACTCAAGATTGGGTCTCACTACCAGGTGTTCTGCCTGTGGCTTCAGGG 1140
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1081 GGTATCTTTTTCACTCAAGATTGGGTCTCACTACCTGGTGTTCTGCCTGTGGCTTCAGGG 1140
Query 1141 GGTATTCACGTTTGGCATATGCCTGCTTTGACCGAGATCTTTGGAGATGATTCTGTACTA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGTATTCACGTTTGGCATATGCCTGCTTTGACCGAGATCTTTGGAGATGATTCTGTACTA 1200
Query 1201 CAATTCGGTGGAGGAACTTTAGGCCACCCTTGGGGAAATGCACCGGGTGCCGTAGCTAAC 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1201 CAATTCGGTGGAGGAACTTTAGGCCACCCTTGGGGAAATGCACCGGGTGCCGTAGCCAAC 1260
Query 1261 CGAGTAGCTCTGGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCAGTCGAG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CGAGTAGCTCTGGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCAGTCGAG 1320
Query 1321 GGTAATGAAATTATCCGTGAAGCTTGCAAGTGGAGTCCTGAACTAGCTGCTGCTTGTGAA 1380
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1321 GGTAATGAAATTATCCGTGAAGCTTGCAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAA 1380
Query 1381 GTATGGAAAGAGATCAGATTTAACTTCCCAACCGTCGATAAATTAGATGGCCAAGAGTAG 1440
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1381 GTATGGAAAGAGATCACATTTAACTTCCCAACCATCGATAAATTAGATGGCCAAGAGTAG 1440
> AT2G07732.1 | Symbols: | Ribulose bisphosphate carboxylase large
chain, catalytic domain | chr2:3468168-3468774 REVERSE
LENGTH=607
Length=607
Score = 955 bits (517), Expect = 0.0
Identities = 556/574 (97%), Gaps = 5/574 (1%)
Strand=Plus/Plus
Query 543 CGCGAAGAACTATGGTAGAGCAGTTTATGAATGTCTACGTGGTGGACTTGATTTTACCAA 602
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 39 CGCGAAGAACTATGGTAGAGCAGTTTATGAATGTCTACGTGGTGGACTTTATTTTACCAA 98
Query 603 AGATGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTTTG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 AGATGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTTTG 158
Query 663 TGCCGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAAGGGCATTATTTGAA 722
|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 159 TGCCGAAGCTGTTTATAAAGCACAGGCTGAAACAGGTGGAATCAAAGGGCATTATTTGAA 218
Query 723 TGCTACTGCGGGTACATGCGAAGAAATGATCAAAAGAGCTGTATTTGCCAGAGAATTGGG 782
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 TGCTACTCCGGGTACATGCGAAGAAATGATCAAAAGAGCTGTATTTGCCAGAGAATTGGG 278
Query 783 AGTTCCTATCGTAATGCATGACTACTTAACAGGGGGATTCACCGCAAATACTAGTTTGGC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 AGTTCCTATCGTAATGCATGACTACTTAACAGGGGGATTCACCGCAAATACTAGTTTGGC 338
Query 843 TCATTATTGCCGAGATAATGGCCTACTTCTTCACATCCACCGTGCAATGCACGCTGTTAT 902
||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 339 TCATT----C-GAGATAATGGCCTACTTCTTCACATCCACCGTGCAATGCATGCTGTTAT 393
Query 903 TGATAGACAGAAGAATCATGGTATGCACTTCCGTGTACTAACTAAAGCTTTACGTCTATC 962
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 394 TGATAGACAGAAGAATCATGGTTTGCACTTCCGTGTACTAGCTAAAGCTTTACGTCTATC 453
Query 963 TGGTGGAGATCATGTTCACGCGGGTACAGTAGTAGGTAAACTTGAAGGAGACAGGGAGTC 1022
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 454 TGGTGGAGATCATATTCACGCGGGTACAGTAGTAGGTAAACTTGAAGGAGACAGAGAGTC 513
Query 1023 AACTTTGGGCTTTGTTGATTTACTGCGCGATGATTATGTTGAAAAAGATCGAAGCCGCGG 1082
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 514 AACTTTGGGCTTTGTTGATTTACTGCGCGATGATTATGTTGAAAAAGATTGAAGCCGCGG 573
Query 1083 TATCTTTTTCACTCAAGATTGGGTCTCACTACCA 1116
|||||||||||||||||||||| |||| ||||||
Sbjct 574 TATCTTTTTCACTCAAGATTGGATCTCGCTACCA 607
> ATMG00280.1 | Symbols: ORF110A | Ribulose bisphosphate carboxylase
large chain, catalytic domain | chrM:77819-78151 REVERSE
LENGTH=333
Length=333
Score = 516 bits (279), Expect = 3e-145
Identities = 290/295 (98%), Gaps = 1/295 (0%)
Strand=Plus/Plus
Query 543 CGCGAAGAACTATGGTAGAGCAGTTTATGAATGTCTACGTGGTGGACTTGATTTTACCAA 602
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 39 CGCGAAGAACTATGGTAGAGCAGTTTATGAATGTCTACGTGGTGGACTTTATTTTACCAA 98
Query 603 AGATGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTTTG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 AGATGATGAGAATGTGAACTCCCAACCATTTATGCGTTGGAGAGACCGTTTCTTATTTTG 158
Query 663 TGCCGAAGCTATTTATAAATCACAGGCTGAAACAGGTGAAATCAAAGGGCATTATTTGAA 722
|||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 159 TGCCGAAGCTGTTTATAAAGCACAGGCTGAAACAGGTGGAATCAAAGGGCATTATTTGAA 218
Query 723 TGCTACTGCGGGTACATGCGAAGAAATGATCAAAAGAGCTGTATTTGCCAGAGAATTGGG 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 TGCTACTGCGGGTACATGCGAAGAAATGATCAAAAGAGCTGTATTTGCCAGAGAATTGGG 278
Query 783 AGTTCCTATCGTAATGCATGACTACTTAA-CAGGGGGATTCACCGCAAATACTAG 836
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 279 AGTTCCTATCGTAATGCATGACTACTTAAACAGGGGGATTCACCGCAAATACTAG 333
> AT3G32895.1 | Symbols: | transposable element gene | chr3:13431016-13435542
FORWARD LENGTH=4527
Length=4527
Score = 115 bits (62), Expect = 1e-24
Identities = 64/65 (98%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1011 AGACAGGGAGTCAACTTTGGGCTTTGTTGATTTACTGCGCGATGATTATGTTGAAAAAGA 1070
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3089 AGACAGGGAGTCAACTTTGGGCTTTGTTGATTTACTGCACGATGATTATGTTGAAAAAGA 3148
Query 1071 TCGAA 1075
|||||
Sbjct 3149 TCGAA 3153
> AT3G22238.1 | Symbols: | pseudogene, putative ribulose 1,5-bisphosphate
carboxylase, similar to ribulose 1,5-bisphosphate
carboxylase GB:AAA82567 from (Ludwigia peruviana); blastp
match of 70% identity and 9.6e-53 P-value to GP|17224644|gb|AAL37058.1||AF307471
ribulose-1,5-bisphosphate carboxylase large
subunit {Dioscorea pyrenaica} | chr3:7861995-7862568 FORWARD
LENGTH=574
Length=574
Score = 102 bits (55), Expect = 9e-21
Identities = 66/71 (93%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 5 CACCACAAACAGAGACTAAAGCAAGTGTTGGA-TTCAAAGCTGGTGTTAAAGAGTATAAA 63
|||||||||||||||||||||||| | ||||| |||||| |||||||||||||||||||
Sbjct 5 CACCACAAACAGAGACTAAAGCAATTTTTGGATTTCAAA-TTGGTGTTAAAGAGTATAAA 63
Query 64 TTGACTTATTA 74
|||||||||||
Sbjct 64 TTGACTTATTA 74
> AT3G22234.1 | Symbols: | pseudogene, putative ribulose 1,5-bisphosphate
carboxylase, similar to ribulose 1,5-bisphosphate
carboxylase GB:AAA82567 from (Ludwigia peruviana); blastp
match of 70% identity and 9.6e-53 P-value to GP|17224644|gb|AAL37058.1||AF307471
ribulose-1,5-bisphosphate carboxylase large
subunit {Dioscorea pyrenaica} | chr3:7852903-7853476 FORWARD
LENGTH=574
Length=574
Score = 102 bits (55), Expect = 9e-21
Identities = 66/71 (93%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 5 CACCACAAACAGAGACTAAAGCAAGTGTTGGA-TTCAAAGCTGGTGTTAAAGAGTATAAA 63
|||||||||||||||||||||||| | ||||| |||||| |||||||||||||||||||
Sbjct 5 CACCACAAACAGAGACTAAAGCAATTTTTGGATTTCAAA-TTGGTGTTAAAGAGTATAAA 63
Query 64 TTGACTTATTA 74
|||||||||||
Sbjct 64 TTGACTTATTA 74
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5