BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg907902 Length=486 Score E Sequences producing significant alignments: (Bits) Value AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally... 556 5e-158 > AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally active 4 | chr1:24236258-24240705 FORWARD LENGTH=1341 Length=1341 Score = 556 bits (301), Expect = 5e-158 Identities = 353/378 (93%), Gaps = 3/378 (1%) Strand=Plus/Plus Query 78 CGAAATTGCCATTGAAATGGCTCTCAAAGCTTCACCAGCTGCCGGATTATTCCCTCCTCT 137 |||||| ||||||||||||||||||||||||||||| | | ||||||||||||||||||| Sbjct 56 CGAAATCGCCATTGAAATGGCTCTCAAAGCTTCACCTGTTACCGGATTATTCCCTCCTCT 115 Query 138 CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCT---AATCGCCCTTATTCCCTCAGGGT 194 |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | Sbjct 116 CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCTTCTAATCGCCCTTGTTCCCTCAGGAT 175 Query 195 TCTCCCCCTCAGACCATCCTTCTTCGGTAACTCCAGTGGGGCTCTGAGAGTGAATGTGCT 254 |||||| |||||| |||| |||||||||||||| ||||| || ||||||||||||||| | Sbjct 176 TCTCCCTCTCAGAACATCTTTCTTCGGTAACTCAAGTGGAGCGCTGAGAGTGAATGTGTT 235 Query 255 GAGATTAGCTTGTGCTAATAGACTCAGGTGCAATGGTCACGGTGCTACGATGAATCTTTT 314 |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 236 GAGATTAGCTTGTGATAATAGACTCAGGTGCAATGGTCATGGTGCTACTATGAATCTTTT 295 Query 315 TGAACGGTTTTCTAGAGTGGTCAAGTCATATGCAAATGCGTTCATAAGCTCCTTCGAAGA 374 |||||| ||||||||||||||||||||||||||||||||| |||||||||| || ||||| Sbjct 296 TGAACGATTTTCTAGAGTGGTCAAGTCATATGCAAATGCGCTCATAAGCTCTTTTGAAGA 355 Query 375 CCCGGAGAAAATCTTGGAGCAAACTGTCATTGAAAAGAATAGTGATTTGACAAAGATGCG 434 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 356 CCCGGAGAAAATCCTGGAGCAAACTGTCATTGAAATGAATAGTGATTTGACAAAGATGCG 415 Query 435 TCAAGCCACTGCACAGGT 452 |||||||||||||||||| Sbjct 416 TCAAGCCACTGCACAGGT 433 Score = 52.8 bits (28), Expect = 3e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 456 GCCCTTAAACGACGAAAGTCTTTTGCTG 483 |||||||||||||||||||||||||||| Sbjct 552 GCCCTTAAACGACGAAAGTCTTTTGCTG 579 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23157941767 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5