BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907902

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally...   556    5e-158


> AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally 
active 4 | chr1:24236258-24240705 FORWARD LENGTH=1341
Length=1341

 Score =  556 bits (301),  Expect = 5e-158
 Identities = 353/378 (93%), Gaps = 3/378 (1%)
 Strand=Plus/Plus

Query  78   CGAAATTGCCATTGAAATGGCTCTCAAAGCTTCACCAGCTGCCGGATTATTCCCTCCTCT  137
            |||||| ||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct  56   CGAAATCGCCATTGAAATGGCTCTCAAAGCTTCACCTGTTACCGGATTATTCCCTCCTCT  115

Query  138  CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCT---AATCGCCCTTATTCCCTCAGGGT  194
            ||||||||||||||||||||||||||||||||||   |||||||||| |||||||||| |
Sbjct  116  CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCTTCTAATCGCCCTTGTTCCCTCAGGAT  175

Query  195  TCTCCCCCTCAGACCATCCTTCTTCGGTAACTCCAGTGGGGCTCTGAGAGTGAATGTGCT  254
            |||||| |||||| |||| |||||||||||||| ||||| || ||||||||||||||| |
Sbjct  176  TCTCCCTCTCAGAACATCTTTCTTCGGTAACTCAAGTGGAGCGCTGAGAGTGAATGTGTT  235

Query  255  GAGATTAGCTTGTGCTAATAGACTCAGGTGCAATGGTCACGGTGCTACGATGAATCTTTT  314
            |||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  236  GAGATTAGCTTGTGATAATAGACTCAGGTGCAATGGTCATGGTGCTACTATGAATCTTTT  295

Query  315  TGAACGGTTTTCTAGAGTGGTCAAGTCATATGCAAATGCGTTCATAAGCTCCTTCGAAGA  374
            |||||| ||||||||||||||||||||||||||||||||| |||||||||| || |||||
Sbjct  296  TGAACGATTTTCTAGAGTGGTCAAGTCATATGCAAATGCGCTCATAAGCTCTTTTGAAGA  355

Query  375  CCCGGAGAAAATCTTGGAGCAAACTGTCATTGAAAAGAATAGTGATTTGACAAAGATGCG  434
            ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  356  CCCGGAGAAAATCCTGGAGCAAACTGTCATTGAAATGAATAGTGATTTGACAAAGATGCG  415

Query  435  TCAAGCCACTGCACAGGT  452
            ||||||||||||||||||
Sbjct  416  TCAAGCCACTGCACAGGT  433


 Score = 52.8 bits (28),  Expect = 3e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  456  GCCCTTAAACGACGAAAGTCTTTTGCTG  483
            ||||||||||||||||||||||||||||
Sbjct  552  GCCCTTAAACGACGAAAGTCTTTTGCTG  579



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23157941767


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5