BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907919

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65190.1 | Symbols:  | Protein kinase superfamily protein | ...   167    1e-40
  AT5G35796.1 | Symbols:  | pseudogene, similar to Putative prote...   148    3e-35


> AT1G65190.1 | Symbols:  | Protein kinase superfamily protein 
| chr1:24215644-24217328 REVERSE LENGTH=1685
Length=1685

 Score =  167 bits (90),  Expect = 1e-40
 Identities = 168/202 (83%), Gaps = 20/202 (10%)
 Strand=Plus/Plus

Query  119  GGAGCCAAGTTGTTAG-AGATCTGATCGAATGTTGCGATGGAAAATCCAATCCCATCAGA  177
            |||||||||||||||| ||| || ||||||||||||||||| |||||||||||||||| |
Sbjct  165  GGAGCCAAGTTGTTAGAAGAGCTCATCGAATGTTGCGATGGCAAATCCAATCCCATCAAA  224

Query  178  TTCTCTCTGCTGACGTCTGATGAGATCCGCAAAGACACCAACAATTACAG-CA---GATT  233
            |||| ||| ||   | |||||||||||||||||| |||||||| || ||| ||    | |
Sbjct  225  TTCT-TCT-CT---G-CTGATGAGATCCGCAAAGCCACCAACATTTTCAGCCACTCTAAT  278

Query  234  C-TG--GAT----TAG-ATTTTCCCTTCAAATGGTATTCAGGTAAGAACGAGAACCATCC  285
            | ||   ||     || |||||  || | |||||||||||||||||||||||||||||||
Sbjct  279  CTTGTTCATCAGGAAGAATTTT-ACTGCCAATGGTATTCAGGTAAGAACGAGAACCATCC  337

Query  286  CATGATACTCATCAGGAAAGAT  307
            ||||||||||||||||||||||
Sbjct  338  CATGATACTCATCAGGAAAGAT  359


> AT5G35796.1 | Symbols:  | pseudogene, similar to Putative protein 
kinase, blastp match of 29% identity and 1.6e-16 P-value 
to GP|21671940|gb|AAM74302.1|AC083944_20|AC083944 Putative 
protein kinase {Oryza sativa (japonica cultivar-group)} | chr5:13968537-13969932 
REVERSE LENGTH=1396
Length=1396

 Score =  148 bits (80),  Expect = 3e-35
 Identities = 196/249 (79%), Gaps = 20/249 (8%)
 Strand=Plus/Plus

Query  122  GCCAAGTTGTTAG-AGATCTGATCGAATGT-TGCGATGGAAAATCCAATCCCATCAGATT  179
            ||||||||||||| ||| || ||||||| |  || |||| |||||||||||||||| |||
Sbjct  90   GCCAAGTTGTTAGAAGAGCTCATCGAAT-TCGGCCATGGCAAATCCAATCCCATCAAATT  148

Query  180  CTCTCTGCTGACGTCTGATGAGATCCGCAAAGACACCAACAATTACA--G-C--A----G  230
            || ||| |||  |  ||||||||||||||| | ||||||||||| ||  | |  |    |
Sbjct  149  CT-TCT-CTG--G--TGATGAGATCCGCAATGCCACCAACAATTTCAGCGACTAATCTTG  202

Query  231  ATTCTGGATTAG-ATTTTCCCTTCAAATGGTATTCAGGTAAGAACGAGAACCATCCCATG  289
             |||| ||  || |||||  || | | |||||||||||||||||||||||||||||||||
Sbjct  203  TTTCTCGAAAAGAATTTT-ACTACCACTGGTATTCAGGTAAGAACGAGAACCATCCCATG  261

Query  290  ATACTCATCAGGAAAGATGTTTGCTAGTGGACTGGCTTGAGAGAATATCTTTTGTGCCAC  349
            || ||||| | ||||||| || ||| || || |  ||| | || | |||||||| ||| |
Sbjct  262  ATTCTCATTAAGAAAGATCTTGGCTTGTCGAGTCTCTTCAAAGTAGATCTTTTGAGCCGC  321

Query  350  GACATAGCA  358
            |||||||||
Sbjct  322  GACATAGCA  330



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22404429562


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5