BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907920

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally...   579    1e-164


> AT1G65260.1 | Symbols: PTAC4, VIPP1 | plastid transcriptionally 
active 4 | chr1:24236258-24240705 FORWARD LENGTH=1341
Length=1341

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 357/378 (94%), Gaps = 3/378 (1%)
 Strand=Plus/Plus

Query  9    CGAAATTGCCATTGAAATGGCTCTCAAAGCTTCACCAGTTGCCGGATTATTCCCTCCTCT  68
            |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct  56   CGAAATCGCCATTGAAATGGCTCTCAAAGCTTCACCTGTTACCGGATTATTCCCTCCTCT  115

Query  69   CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCT---AATCGCCCTTGTTCCCTCAGGGT  125
            ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| |
Sbjct  116  CCGTCCTACTGCTTCTTCTTCCCCTTCGACTTCTTCTAATCGCCCTTGTTCCCTCAGGAT  175

Query  126  TCTCCCCCTCAGACCATCCTTCTTCGGTAACTCCAGTGGGGCTCTGAGAGTGAATGTGCT  185
            |||||| |||||| |||| |||||||||||||| ||||| || ||||||||||||||| |
Sbjct  176  TCTCCCTCTCAGAACATCTTTCTTCGGTAACTCAAGTGGAGCGCTGAGAGTGAATGTGTT  235

Query  186  GAGATTAGCTTGTGCTAATAGACTCAGGTGCAATGGTCACGGTGCTACGATGAATCTTTT  245
            |||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  236  GAGATTAGCTTGTGATAATAGACTCAGGTGCAATGGTCATGGTGCTACTATGAATCTTTT  295

Query  246  TGAACGGTTTTCTAGAGTGGTCAAGTCATATGCAAATGCGCTCATAAGCTCCTTCGAAGA  305
            |||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct  296  TGAACGATTTTCTAGAGTGGTCAAGTCATATGCAAATGCGCTCATAAGCTCTTTTGAAGA  355

Query  306  CCCGGAGAAAATCCTGGAGCAAACTGTCATTGAAAAGAATAGTGATTTGACAAAGATGCG  365
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  356  CCCGGAGAAAATCCTGGAGCAAACTGTCATTGAAATGAATAGTGATTTGACAAAGATGCG  415

Query  366  TCAAGCCACTGCACAGGT  383
            ||||||||||||||||||
Sbjct  416  TCAAGCCACTGCACAGGT  433


 Score = 52.8 bits (28),  Expect = 3e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  387  GCCCTTAAACGACGAAAGTCTTTTGCTG  414
            ||||||||||||||||||||||||||||
Sbjct  552  GCCCTTAAACGACGAAAGTCTTTTGCTG  579



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5