BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907926

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ...   693    0.0   
  AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ...   521    2e-147


> AT4G19640.1 | Symbols: ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, 
ATRAB-F2B, RAB-F2B | Ras-related small GTP-binding family 
protein | chr4:10687198-10689617 REVERSE LENGTH=1014
Length=1014

 Score =  693 bits (375),  Expect = 0.0
 Identities = 389/396 (98%), Gaps = 0/396 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGGA  60
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  169  ATGGCTGCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTGCTTGGAGATGTTGGT  228

Query  61   GCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA  120
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  229  GCTGGAAAATCAAGTCTTGTGTTACGGTTTGTCAAAGATCAGTTTGTTGAATTCCAGGAA  288

Query  121  TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTCAACGATGCAACTGTCAAG  180
            ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct  289  TCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTGAACGATGCCACTGTGAAG  348

Query  181  TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  349  TTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTAC  408

Query  241  AGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCCTCGTTTGAGAGG  300
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  409  AGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCTTCGTTTGAGAGG  468

Query  301  GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  469  GCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCTT  528

Query  361  GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG  396
            ||||||||||||||||||||||||||||||||||||
Sbjct  529  GCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG  564


> AT5G45130.1 | Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, 
ATRAB-F2A, RAB-F2A | RAB homolog 1 | chr5:18244266-18246450 
FORWARD LENGTH=1222
Length=1222

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 359/397 (90%), Gaps = 2/397 (1%)
 Strand=Plus/Plus

Query  1    ATGGCT-GCAGCTGGAAACAAGAGCATTAACGCCAAATTGGTGTTACTTGGAGATGTTGG  59
            |||||| ||  |||||||||||| ||| |||||||||||||| ||||| |||||||||||
Sbjct  230  ATGGCTAGC-TCTGGAAACAAGAACATCAACGCCAAATTGGTATTACTAGGAGATGTTGG  288

Query  60   AGCTGGAAAATCAAGTCTTGTGTTACGTTTTGTCAAAGATCAGTTTGTTGAATTCCAGGA  119
            |||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |||||
Sbjct  289  AGCTGGAAAATCAAGTCTTGTGCTACGGTTTGTGAAAGATCAGTTTGTTGAATTTCAGGA  348

Query  120  ATCAACCATTGGTGCTGCTTTTTTCTCACAAACGTTAGCTGTCAACGATGCAACTGTCAA  179
            ||||||||||||||| ||||||||||| ||||| || ||||| || ||||| ||||| ||
Sbjct  349  ATCAACCATTGGTGCAGCTTTTTTCTCTCAAACATTGGCTGTGAATGATGCGACTGTGAA  408

Query  180  GTTTGAGATTTGGGATACAGCGGGTCAGGAACGGTACCATAGTTTGGCTCCAATGTACTA  239
            ||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct  409  GTTTGAGATATGGGATACAGCTGGTCAGGAACGATACCACAGTTTGGCTCCAATGTACTA  468

Query  240  CAGAGGTGCTGCTGCTGCAATCATTGTTTTTGATGTTACGAATCAGGCCTCGTTTGAGAG  299
            ||| ||||| |||||||| || ||||| |||||  |||| ||||| ||||| ||||||||
Sbjct  469  CAGGGGTGCAGCTGCTGCTATTATTGTCTTTGACATTACTAATCAAGCCTCATTTGAGAG  528

Query  300  GGCAAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTCATGGCCCT  359
            ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct  529  GGCGAAGAAATGGGTTCAGGAACTGCAGGCACAAGGTAACCCTAATATGGTGATGGCTCT  588

Query  360  TGCTGGAAACAAATCTGATTTATTAGATGCAAGGAAG  396
            ||||||||||||| ||||||||||||| |||||||||
Sbjct  589  TGCTGGAAACAAAGCTGATTTATTAGACGCAAGGAAG  625



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20660044839


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5