BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907929
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28237.1 | Symbols: | Pyridoxal-5'-phosphate-dependent enzy... 401 1e-111
> AT5G28237.1 | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme
family protein | chr5:10207353-10213598 REVERSE LENGTH=1578
Length=1578
Score = 401 bits (217), Expect = 1e-111
Identities = 239/250 (96%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 1 GGTGGTAAACCTGATGTATTGGTGGCTTGTGTGGGAAGTGGCTCTAATGCATTGGGTTTG 60
|||||||| |||||||| |||||||| ||||||||||||||||| || ||||||||||||
Sbjct 924 GGTGGTAAGCCTGATGTGTTGGTGGCCTGTGTGGGAAGTGGCTCAAACGCATTGGGTTTG 983
Query 61 TTCCATGAGTTTGTTGGGGATAAGGATGTGCGGTTAGTCGGTATCGAGGCTGCGGGGCTT 120
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 984 TTCCATGAGTTTGTTGGGGATGAGGATGTGCGGTTAGTCGGTGTCGAGGCTGCGGGGCTT 1043
Query 121 GGTCTGGATTCGGGGAAACATTCAGCTACTTTGGCCGTTGGAGATGTTGGTGTATACCAT 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1044 GGTCTGGATTCGGGGAAACATTCAGCTACTTTGGCCTTTGGAGATGTTGGTGTATACCAT 1103
Query 181 GGTTCCATGAGATATTTATTGCAAGATGATCAAGGACAGATACTTAATCCACACTCCGTA 240
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1104 GGTTCCATGAGCTATTTATTGCAAGATGATCAAGGACAGATACTTAAACCACACTCCGTA 1163
Query 241 GGAGTTGGGT 250
|| |||||||
Sbjct 1164 GGTGTTGGGT 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11461046772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5