BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg907931
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27980.1 | Symbols: | Plant invertase/pectin methylesterase... 255 5e-67
AT1G36700.1 | Symbols: | pseudogene, hypothetical protein | ch... 206 5e-52
AT4G03930.1 | Symbols: | Plant invertase/pectin methylesterase... 187 2e-46
> AT3G27980.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr3:10393904-10395861 FORWARD LENGTH=1494
Length=1494
Score = 255 bits (138), Expect = 5e-67
Identities = 310/388 (80%), Gaps = 32/388 (8%)
Strand=Plus/Plus
Query 13 GTTTGCAAAGGATA---TGATGACAAACCGTCATGTCAAAACCTCTTGTTGAAGCTCAAG 69
||| |||||| ||| ||||||||||| ||||||||||||||| |||||| |||| |||
Sbjct 55 GTTAGCAAAGAATATTGTGATGACAAACAGTCATGTCAAAACCTTTTGTTGGAGCTTAAG 114
Query 70 AC-GGTATCTTCGTCACTTTTGGAGATGAGACGTCGTGACTTATTGATCTTCGTCTTGAA 128
| ||| || |||||||| | |||||| ||||||||||||||||||||| |||| |||||
Sbjct 115 GCGGGT-TCATCGTCACTCTCGGAGATTAGACGTCGTGACTTATTGATCATCGTTTTGAA 173
Query 129 AAACTCCGTGTGGAGGGTCGACATGGATATGATTGATGTGA-GGAAAGACACAAAACTAC 187
|| ||||| ||||| ||||||||| |||||||| ||||| || | || ||||||| ||
Sbjct 174 GAATTCCGTACGGAGGATCGACATGGCTATGATTGGTGTGATGG-ATGATACAAAACAAC 232
Query 188 TTGAGGAGATGGAG-ATGGAGAGTGATATGCT-TGGAGGAAG-CCCTAATC---TT---G 238
||| ||||||||| || || | || | || | || |||| | | | |||| || |
Sbjct 233 ATGAAGAGATGGAGAAT-GATA-TGCT-TGGTGTGAAGGAGGACACAAATCTATTTGAGG 289
Query 239 -GAT-CT-TA--C-GA--A-AACGT-CCACACTTGGCTCAGTGGTGTTCTTACTAGCTAC 288
||| | | | || | || | |||||||||||| ||| | |||||||||||||||
Sbjct 290 AGATGATGGAGTCGGAGGAGAA-TTCCCACACTTGGCTTAGTAGCGTTCTTACTAGCTAC 348
Query 289 ATCACATGTATCGACGGAATTGGTGAAGGTGTCTATAAACGTCGGGTCAACCCAGAGCTT 348
|||||||||||||||| |||||||||||||| ||||||||| |||||| | ||| |||||
Sbjct 349 ATCACATGTATCGACGAAATTGGTGAAGGTGCCTATAAACGCCGGGTCGAGCCAAAGCTT 408
Query 349 GAGGAAC-TCATTTCTAGAGCAAGAGTa 375
|| ||| |||||||||| |||||||||
Sbjct 409 GAA-AACCTCATTTCTAGGGCAAGAGTA 435
> AT1G36700.1 | Symbols: | pseudogene, hypothetical protein |
chr1:13877990-13878553 REVERSE LENGTH=564
Length=564
Score = 206 bits (111), Expect = 5e-52
Identities = 142/157 (90%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 220 GGAGGAAGCCCTAATCTTGGATCTTACGAAAACGTCCACACTTGGCTCAGTGGTGTTCTT 279
|||| |||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 330 GGAGAAAGCCCTAATCTTGGATCTTACGAAAACGTCCACACTTAGCTTAGTGGCGTTCTT 389
Query 280 ACTAGCTACATCACATGTATCGACGGAATTGGTGAAGGTGTCTATAAACG-TCGGGTCAA 338
||||||||||||||||||||| ||| |||||||||||||| ||||||||| | ||||| |
Sbjct 390 ACTAGCTACATCACATGTATCAACGAAATTGGTGAAGGTGCCTATAAACGAT-GGGTCGA 448
Query 339 CCCAGAGCTTGAGGAACTCATTTCTAGAGCAAGAGTa 375
||| | |||||||| ||||||||||| |||||||||
Sbjct 449 GCCATACCTTGAGGACCTCATTTCTAGGGCAAGAGTA 485
> AT4G03930.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr4:1870422-1872387 FORWARD LENGTH=1575
Length=1575
Score = 187 bits (101), Expect = 2e-46
Identities = 125/137 (91%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 228 CCCTAATCTTGGATCTTACGAAAACGTCCACACTTGGCTCAGTGGTGTTCTTACTAGCTA 287
|||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 357 CCCTTATCTTGGATCTTACGAAAACATCCACACTTGGCTCAGTGGCGTTCTTACTAGCTA 416
Query 288 CATCACATGTATCGACGGAATTGGTGAAGGTGTCTATAAACGTCGGGTCAACCCAGAGCT 347
||||||||||||||||| ||||||||| |||| |||||||||||||||| | ||| ||||
Sbjct 417 CATCACATGTATCGACGAAATTGGTGACGGTGCCTATAAACGTCGGGTCGAGCCACAGCT 476
Query 348 TGAGGAACTCATTTCTA 364
| | || ||||||||||
Sbjct 477 TCAAGACCTCATTTCTA 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53664382605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5