BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg907950

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65481.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   399    5e-111


> AT1G65481.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system. | chr1:24341026-24341739 
REVERSE LENGTH=517
Length=517

 Score =  399 bits (216),  Expect = 5e-111
 Identities = 249/265 (94%), Gaps = 2/265 (1%)
 Strand=Plus/Plus

Query  1    ATGACAAGAAAGGCACCATTCTTCGTAATTCTCATCGTAGCTTTGCTCCTTTTGTCTCCT  60
            |||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||| ||
Sbjct  1    ATGACAGGAAAGGCACCATTCTTCGTGATTCTCATCGCAGCTCTGCTCCTTTTGTCTTCT  60

Query  61   CTCTTCTTCGGACAAATAGAAGC-ACTATCGACCAAACAACCAAAGCATCGGAAGCTCGG  119
             ||||||||||| || || |||| | ||||||||||||||||||||||||||||||||||
Sbjct  61   TTCTTCTTCGGAGAAGTAAAAGCTA-TATCGACCAAACAACCAAAGCATCGGAAGCTCGG  119

Query  120  GAATAGAGAAGGAGATGAAAATAGGAGTAATGAAATTGTTGTCCAAATGAAAGCAAGAGT  179
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  120  GAATAGAGAAGGAGATGAAAATAGGAGCAATGAAATTGTTGTCCAAATGAAAGCAAGAGT  179

Query  180  GAAGCGCAGCAAGTCAAAAAGGGGACCCCaaaaaaaGGAACCTTATAAGAAGCCACCTTG  239
             ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  180  AAAGCGAAGCAAGTCAAAAAGGGGACCCCAGAAAAAGGAACCTTATAAGAAGCCACCTTG  239

Query  240  CAGTCCCCCAACTCATCCAGAATAA  264
            |||||||||||||||||||| ||||
Sbjct  240  CAGTCCCCCAACTCATCCAGCATAA  264



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5